Pulling molecule out of surface
TZU-JEN LIN
tzujen... at gmail.com
Tue Oct 20 04:27:29 UTC 2015
Dear all CP2K users
I attempt to do a calculation for pulling phosphate or carbonate out of
mineral surfaces by metadynamics.
I checked the manual of CP2K, it looks like there is no problem for pulling
an ion out of a defined plane,
because the collective variable is just the distance between the ion and
defined plane.
My question is that is it possible to define center of mass of a molecule
as a collective variable ?
Or I just can only pull phosphorus atom or carbon atoms of phosphate and
carbonate respectively out of surface ?
BEST,
Tzu-Jen Lin
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