[CP2K:6198] Error in compiling CP2K trunk version with PLUMED-2.1.1

[Hang Xiao]

Hi Iain,

Thank you for your help. After I add  -L/usr/lib/x86_64-linux-gnu to the 
LDFLAGS, I still got the same error message as the one shown above. 

I will show you more lines of the error message:

>, std::less<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > >, std::allocator<std::pair<std::basic_string<char, 
std::char_traits<char>, std::allocator<char> > const, 
PLMD::vesselbase::Vessel* (*)(PLMD::vesselbase::VesselOptions const&)> > 
>::_M_erase(std::_Rb_tree_node<std::pair<std::basic_string<char, 
std::char_traits<char>, std::allocator<char> > const, 
PLMD::vesselbase::Vessel* (*)(PLMD::vesselbase::VesselOptions const&)> 
>*)]+0x62): undefined reference to `std::basic_string<char, 
std::char_traits<char>, std::allocator<char> 
>::_Rep::_M_destroy(std::allocator<char> const&)'
VesselRegister.cpp:(.text._ZNSt8_Rb_treeISsSt4pairIKSsPFPN4PLMD10vesselbase6VesselERKNS3_13VesselOptionsEEESt10_Select1stISB_ESt4lessISsESaISB_EE8_M_eraseEPSt13_Rb_tree_nodeISB_E[std::_Rb_tree<std::basic_string<char, 
std::char_traits<char>, std::allocator<char> >, 
std::pair<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > const, PLMD::vesselbase::Vessel* 
(*)(PLMD::vesselbase::VesselOptions const&)>, 
std::_Select1st<std::pair<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > const, PLMD::vesselbase::Vessel* 
(*)(PLMD::vesselbase::VesselOptions const&)> >, 
std::less<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > >, std::allocator<std::pair<std::basic_string<char, 
std::char_traits<char>, std::allocator<char> > const, 
PLMD::vesselbase::Vessel* (*)(PLMD::vesselbase::VesselOptions const&)> > 
>::_M_erase(std::_Rb_tree_node<std::pair<std::basic_string<char, 
std::char_traits<char>, std::allocator<char> > const, 
PLMD::vesselbase::Vessel* (*)(PLMD::vesselbase::VesselOptions const&)> 
>*)]+0x6a): undefined reference to `operator delete(void*)'
/usr/local/lib/plumed///src/vesselbase/VesselRegister.o: In function 
`std::_Rb_tree<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> >, std::pair<std::basic_string<char, 
std::char_traits<char>, std::allocator<char> > const, 
PLMD::vesselbase::Vessel* (*)(PLMD::vesselbase::VesselOptions const&)>, 
std::_Select1st<std::pair<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > const, PLMD::vesselbase::Vessel* 
(*)(PLMD::vesselbase::VesselOptions const&)> >, 
std::less<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > >, std::allocator<std::pair<std::basic_string<char, 
std::char_traits<char>, std::allocator<char> > const, 
PLMD::vesselbase::Vessel* (*)(PLMD::vesselbase::VesselOptions const&)> > 
>::_M_erase_aux(std::_Rb_tree_const_iterator<std::pair<std::basic_string<char, 
std::char_traits<char>, std::allocator<char> > const, 
PLMD::vesselbase::Vessel* (*)(PLMD::vesselbase::VesselOptions const&)> >)':
VesselRegister.cpp:(.text._ZNSt8_Rb_treeISsSt4pairIKSsPFPN4PLMD10vesselbase6VesselERKNS3_13VesselOptionsEEESt10_Select1stISB_ESt4lessISsESaISB_EE12_M_erase_auxESt23_Rb_tree_const_iteratorISB_E[std::_Rb_tree<std::basic_string<char, 
std::char_traits<char>, std::allocator<char> >, 
std::pair<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > const, PLMD::vesselbase::Vessel* 
(*)(PLMD::vesselbase::VesselOptions const&)>, 
std::_Select1st<std::pair<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > const, PLMD::vesselbase::Vessel* 
(*)(PLMD::vesselbase::VesselOptions const&)> >, 
std::less<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > >, std::allocator<std::pair<std::basic_string<char, 
std::char_traits<char>, std::allocator<char> > const, 
PLMD::vesselbase::Vessel* (*)(PLMD::vesselbase::VesselOptions const&)> > 
>::_M_erase_aux(std::_Rb_tree_const_iterator<std::pair<std::basic_string<char, 
std::char_traits<char>, std::allocator<char> > const, 
PLMD::vesselbase::Vessel* (*)(PLMD::vesselbase::VesselOptions const&)> 
>)]+0x19): undefined reference to 
`std::_Rb_tree_rebalance_for_erase(std::_Rb_tree_node_base*, 
std::_Rb_tree_node_base&)'
VesselRegister.cpp:(.text._ZNSt8_Rb_treeISsSt4pairIKSsPFPN4PLMD10vesselbase6VesselERKNS3_13VesselOptionsEEESt10_Select1stISB_ESt4lessISsESaISB_EE12_M_erase_auxESt23_Rb_tree_const_iteratorISB_E[std::_Rb_tree<std::basic_string<char, 
std::char_traits<char>, std::allocator<char> >, 
std::pair<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > const, PLMD::vesselbase::Vessel* 
(*)(PLMD::vesselbase::VesselOptions const&)>, 
std::_Select1st<std::pair<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > const, PLMD::vesselbase::Vessel* 
(*)(PLMD::vesselbase::VesselOptions const&)> >, 
std::less<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > >, std::allocator<std::pair<std::basic_string<char, 
std::char_traits<char>, std::allocator<char> > const, 
PLMD::vesselbase::Vessel* (*)(PLMD::vesselbase::VesselOptions const&)> > 
>::_M_erase_aux(std::_Rb_tree_const_iterator<std::pair<std::basic_string<char, 
std::char_traits<char>, std::allocator<char> > const, 
PLMD::vesselbase::Vessel* (*)(PLMD::vesselbase::VesselOptions const&)> 
>)]+0x2b): undefined reference to `std::basic_string<char, 
std::char_traits<char>, std::allocator<char> >::_Rep::_S_empty_rep_storage'
VesselRegister.cpp:(.text._ZNSt8_Rb_treeISsSt4pairIKSsPFPN4PLMD10vesselbase6VesselERKNS3_13VesselOptionsEEESt10_Select1stISB_ESt4lessISsESaISB_EE12_M_erase_auxESt23_Rb_tree_const_iteratorISB_E[std::_Rb_tree<std::basic_string<char, 
std::char_traits<char>, std::allocator<char> >, 
std::pair<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > const, PLMD::vesselbase::Vessel* 
(*)(PLMD::vesselbase::VesselOptions const&)>, 
std::_Select1st<std::pair<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > const, PLMD::vesselbase::Vessel* 
(*)(PLMD::vesselbase::VesselOptions const&)> >, 
std::less<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > >, std::allocator<std::pair<std::basic_string<char, 
std::char_traits<char>, std::allocator<char> > const, 
PLMD::vesselbase::Vessel* (*)(PLMD::vesselbase::VesselOptions const&)> > 
>::_M_erase_aux(std::_Rb_tree_const_iterator<std::pair<std::basic_string<char, 
std::char_traits<char>, std::allocator<char> > const, 
PLMD::vesselbase::Vessel* (*)(PLMD::vesselbase::VesselOptions const&)> 
>)]+0x5a): undefined reference to `std::basic_string<char, 
std::char_traits<char>, std::allocator<char> 
>::_Rep::_M_destroy(std::allocator<char> const&)'
VesselRegister.cpp:(.text._ZNSt8_Rb_treeISsSt4pairIKSsPFPN4PLMD10vesselbase6VesselERKNS3_13VesselOptionsEEESt10_Select1stISB_ESt4lessISsESaISB_EE12_M_erase_auxESt23_Rb_tree_const_iteratorISB_E[std::_Rb_tree<std::basic_string<char, 
std::char_traits<char>, std::allocator<char> >, 
std::pair<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > const, PLMD::vesselbase::Vessel* 
(*)(PLMD::vesselbase::VesselOptions const&)>, 
std::_Select1st<std::pair<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > const, PLMD::vesselbase::Vessel* 
(*)(PLMD::vesselbase::VesselOptions const&)> >, 
std::less<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > >, std::allocator<std::pair<std::basic_string<char, 
std::char_traits<char>, std::allocator<char> > const, 
PLMD::vesselbase::Vessel* (*)(PLMD::vesselbase::VesselOptions const&)> > 
>::_M_erase_aux(std::_Rb_tree_const_iterator<std::pair<std::basic_string<char, 
std::char_traits<char>, std::allocator<char> > const, 
PLMD::vesselbase::Vessel* (*)(PLMD::vesselbase::VesselOptions const&)> 
>)]+0x62): undefined reference to `operator delete(void*)'
/usr/local/lib/plumed///src/vesselbase/VesselRegister.o: In function 
`std::_Rb_tree<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> >, std::pair<std::basic_string<char, 
std::char_traits<char>, std::allocator<char> > const, 
PLMD::vesselbase::Vessel* (*)(PLMD::vesselbase::VesselOptions const&)>, 
std::_Select1st<std::pair<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > const, PLMD::vesselbase::Vessel* 
(*)(PLMD::vesselbase::VesselOptions const&)> >, 
std::less<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > >, std::allocator<std::pair<std::basic_string<char, 
std::char_traits<char>, std::allocator<char> > const, 
PLMD::vesselbase::Vessel* (*)(PLMD::vesselbase::VesselOptions const&)> > 
>::_M_insert_(std::_Rb_tree_node_base const*, std::_Rb_tree_node_base 
const*, std::pair<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > const, PLMD::vesselbase::Vessel* 
(*)(PLMD::vesselbase::VesselOptions const&)> const&)':
VesselRegister.cpp:(.text._ZNSt8_Rb_treeISsSt4pairIKSsPFPN4PLMD10vesselbase6VesselERKNS3_13VesselOptionsEEESt10_Select1stISB_ESt4lessISsESaISB_EE10_M_insert_EPKSt18_Rb_tree_node_baseSK_RKSB_[std::_Rb_tree<std::basic_string<char, 
std::char_traits<char>, std::allocator<char> >, 
std::pair<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > const, PLMD::vesselbase::Vessel* 
(*)(PLMD::vesselbase::VesselOptions const&)>, 
std::_Select1st<std::pair<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > const, PLMD::vesselbase::Vessel* 
(*)(PLMD::vesselbase::VesselOptions const&)> >, 
std::less<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > >, std::allocator<std::pair<std::basic_string<char, 
std::char_traits<char>, std::allocator<char> > const, 
PLMD::vesselbase::Vessel* (*)(PLMD::vesselbase::VesselOptions const&)> > 
>::_M_insert_(std::_Rb_tree_node_base const*, std::_Rb_tree_node_base 
const*, std::pair<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > const, PLMD::vesselbase::Vessel* 
(*)(PLMD::vesselbase::VesselOptions const&)> const&)]+0x92): undefined 
reference to `operator new(unsigned long)'
VesselRegister.cpp:(.text._ZNSt8_Rb_treeISsSt4pairIKSsPFPN4PLMD10vesselbase6VesselERKNS3_13VesselOptionsEEESt10_Select1stISB_ESt4lessISsESaISB_EE10_M_insert_EPKSt18_Rb_tree_node_baseSK_RKSB_[std::_Rb_tree<std::basic_string<char, 
std::char_traits<char>, std::allocator<char> >, 
std::pair<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > const, PLMD::vesselbase::Vessel* 
(*)(PLMD::vesselbase::VesselOptions const&)>, 
std::_Select1st<std::pair<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > const, PLMD::vesselbase::Vessel* 
(*)(PLMD::vesselbase::VesselOptions const&)> >, 
std::less<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > >, std::allocator<std::pair<std::basic_string<char, 
std::char_traits<char>, std::allocator<char> > const, 
PLMD::vesselbase::Vessel* (*)(PLMD::vesselbase::VesselOptions const&)> > 
>::_M_insert_(std::_Rb_tree_node_base const*, std::_Rb_tree_node_base 
const*, std::pair<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > const, PLMD::vesselbase::Vessel* 
(*)(PLMD::vesselbase::VesselOptions const&)> const&)]+0xa7): undefined 
reference to `std::basic_string<char, std::char_traits<char>, 
std::allocator<char> >::basic_string(std::basic_string<char, 
std::char_traits<char>, std::allocator<char> > const&)'
VesselRegister.cpp:(.text._ZNSt8_Rb_treeISsSt4pairIKSsPFPN4PLMD10vesselbase6VesselERKNS3_13VesselOptionsEEESt10_Select1stISB_ESt4lessISsESaISB_EE10_M_insert_EPKSt18_Rb_tree_node_baseSK_RKSB_[std::_Rb_tree<std::basic_string<char, 
std::char_traits<char>, std::allocator<char> >, 
std::pair<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > const, PLMD::vesselbase::Vessel* 
(*)(PLMD::vesselbase::VesselOptions const&)>, 
std::_Select1st<std::pair<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > const, PLMD::vesselbase::Vessel* 
(*)(PLMD::vesselbase::VesselOptions const&)> >, 
std::less<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > >, std::allocator<std::pair<std::basic_string<char, 
std::char_traits<char>, std::allocator<char> > const, 
PLMD::vesselbase::Vessel* (*)(PLMD::vesselbase::VesselOptions const&)> > 
>::_M_insert_(std::_Rb_tree_node_base const*, std::_Rb_tree_node_base 
const*, std::pair<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > const, PLMD::vesselbase::Vessel* 
(*)(PLMD::vesselbase::VesselOptions const&)> const&)]+0xc3): undefined 
reference to `std::_Rb_tree_insert_and_rebalance(bool, 
std::_Rb_tree_node_base*, std::_Rb_tree_node_base*, 
std::_Rb_tree_node_base&)'
VesselRegister.cpp:(.text._ZNSt8_Rb_treeISsSt4pairIKSsPFPN4PLMD10vesselbase6VesselERKNS3_13VesselOptionsEEESt10_Select1stISB_ESt4lessISsESaISB_EE10_M_insert_EPKSt18_Rb_tree_node_baseSK_RKSB_[std::_Rb_tree<std::basic_string<char, 
std::char_traits<char>, std::allocator<char> >, 
std::pair<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > const, PLMD::vesselbase::Vessel* 
(*)(PLMD::vesselbase::VesselOptions const&)>, 
std::_Select1st<std::pair<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > const, PLMD::vesselbase::Vessel* 
(*)(PLMD::vesselbase::VesselOptions const&)> >, 
std::less<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > >, std::allocator<std::pair<std::basic_string<char, 
std::char_traits<char>, std::allocator<char> > const, 
PLMD::vesselbase::Vessel* (*)(PLMD::vesselbase::VesselOptions const&)> > 
>::_M_insert_(std::_Rb_tree_node_base const*, std::_Rb_tree_node_base 
const*, std::pair<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > const, PLMD::vesselbase::Vessel* 
(*)(PLMD::vesselbase::VesselOptions const&)> const&)]+0xf6): undefined 
reference to `__cxa_end_catch'
VesselRegister.cpp:(.text._ZNSt8_Rb_treeISsSt4pairIKSsPFPN4PLMD10vesselbase6VesselERKNS3_13VesselOptionsEEESt10_Select1stISB_ESt4lessISsESaISB_EE10_M_insert_EPKSt18_Rb_tree_node_baseSK_RKSB_[std::_Rb_tree<std::basic_string<char, 
std::char_traits<char>, std::allocator<char> >, 
std::pair<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > const, PLMD::vesselbase::Vessel* 
(*)(PLMD::vesselbase::VesselOptions const&)>, 
std::_Select1st<std::pair<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > const, PLMD::vesselbase::Vessel* 
(*)(PLMD::vesselbase::VesselOptions const&)> >, 
std::less<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > >, std::allocator<std::pair<std::basic_string<char, 
std::char_traits<char>, std::allocator<char> > const, 
PLMD::vesselbase::Vessel* (*)(PLMD::vesselbase::VesselOptions const&)> > 
>::_M_insert_(std::_Rb_tree_node_base const*, std::_Rb_tree_node_base 
const*, std::pair<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > const, PLMD::vesselbase::Vessel* 
(*)(PLMD::vesselbase::VesselOptions const&)> const&)]+0x106): undefined 
reference to `__cxa_begin_catch'
VesselRegister.cpp:(.text._ZNSt8_Rb_treeISsSt4pairIKSsPFPN4PLMD10vesselbase6VesselERKNS3_13VesselOptionsEEESt10_Select1stISB_ESt4lessISsESaISB_EE10_M_insert_EPKSt18_Rb_tree_node_baseSK_RKSB_[std::_Rb_tree<std::basic_string<char, 
std::char_traits<char>, std::allocator<char> >, 
std::pair<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > const, PLMD::vesselbase::Vessel* 
(*)(PLMD::vesselbase::VesselOptions const&)>, 
std::_Select1st<std::pair<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > const, PLMD::vesselbase::Vessel* 
(*)(PLMD::vesselbase::VesselOptions const&)> >, 
std::less<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > >, std::allocator<std::pair<std::basic_string<char, 
std::char_traits<char>, std::allocator<char> > const, 
PLMD::vesselbase::Vessel* (*)(PLMD::vesselbase::VesselOptions const&)> > 
>::_M_insert_(std::_Rb_tree_node_base const*, std::_Rb_tree_node_base 
const*, std::pair<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > const, PLMD::vesselbase::Vessel* 
(*)(PLMD::vesselbase::VesselOptions const&)> const&)]+0x10e): undefined 
reference to `operator delete(void*)'
VesselRegister.cpp:(.text._ZNSt8_Rb_treeISsSt4pairIKSsPFPN4PLMD10vesselbase6VesselERKNS3_13VesselOptionsEEESt10_Select1stISB_ESt4lessISsESaISB_EE10_M_insert_EPKSt18_Rb_tree_node_baseSK_RKSB_[std::_Rb_tree<std::basic_string<char, 
std::char_traits<char>, std::allocator<char> >, 
std::pair<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > const, PLMD::vesselbase::Vessel* 
(*)(PLMD::vesselbase::VesselOptions const&)>, 
std::_Select1st<std::pair<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > const, PLMD::vesselbase::Vessel* 
(*)(PLMD::vesselbase::VesselOptions const&)> >, 
std::less<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > >, std::allocator<std::pair<std::basic_string<char, 
std::char_traits<char>, std::allocator<char> > const, 
PLMD::vesselbase::Vessel* (*)(PLMD::vesselbase::VesselOptions const&)> > 
>::_M_insert_(std::_Rb_tree_node_base const*, std::_Rb_tree_node_base 
const*, std::pair<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > const, PLMD::vesselbase::Vessel* 
(*)(PLMD::vesselbase::VesselOptions const&)> const&)]+0x113): undefined 
reference to `__cxa_rethrow'
/usr/local/lib/plumed///src/vesselbase/VesselRegister.o: In function 
`std::_Rb_tree<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> >, std::pair<std::basic_string<char, 
std::char_traits<char>, std::allocator<char> > const, 
PLMD::vesselbase::Vessel* (*)(PLMD::vesselbase::VesselOptions const&)>, 
std::_Select1st<std::pair<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > const, PLMD::vesselbase::Vessel* 
(*)(PLMD::vesselbase::VesselOptions const&)> >, 
std::less<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > >, std::allocator<std::pair<std::basic_string<char, 
std::char_traits<char>, std::allocator<char> > const, 
PLMD::vesselbase::Vessel* (*)(PLMD::vesselbase::VesselOptions const&)> > 
>::_M_insert_unique(std::pair<std::basic_string<char, 
std::char_traits<char>, std::allocator<char> > const, 
PLMD::vesselbase::Vessel* (*)(PLMD::vesselbase::VesselOptions const&)> 
const&)':
VesselRegister.cpp:(.text._ZNSt8_Rb_treeISsSt4pairIKSsPFPN4PLMD10vesselbase6VesselERKNS3_13VesselOptionsEEESt10_Select1stISB_ESt4lessISsESaISB_EE16_M_insert_uniqueERKSB_[std::_Rb_tree<std::basic_string<char, 
std::char_traits<char>, std::allocator<char> >, 
std::pair<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > const, PLMD::vesselbase::Vessel* 
(*)(PLMD::vesselbase::VesselOptions const&)>, 
std::_Select1st<std::pair<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > const, PLMD::vesselbase::Vessel* 
(*)(PLMD::vesselbase::VesselOptions const&)> >, 
std::less<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > >, std::allocator<std::pair<std::basic_string<char, 
std::char_traits<char>, std::allocator<char> > const, 
PLMD::vesselbase::Vessel* (*)(PLMD::vesselbase::VesselOptions const&)> > 
>::_M_insert_unique(std::pair<std::basic_string<char, 
std::char_traits<char>, std::allocator<char> > const, 
PLMD::vesselbase::Vessel* (*)(PLMD::vesselbase::VesselOptions const&)> 
const&)]+0xc1): undefined reference to 
`std::_Rb_tree_decrement(std::_Rb_tree_node_base*)'
/usr/local/lib/plumed///src/vesselbase/VesselRegister.o: In function 
`std::_Rb_tree<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> >, std::pair<std::basic_string<char, 
std::char_traits<char>, std::allocator<char> > const, 
PLMD::vesselbase::Vessel* (*)(PLMD::vesselbase::VesselOptions const&)>, 
std::_Select1st<std::pair<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > const, PLMD::vesselbase::Vessel* 
(*)(PLMD::vesselbase::VesselOptions const&)> >, 
std::less<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > >, std::allocator<std::pair<std::basic_string<char, 
std::char_traits<char>, std::allocator<char> > const, 
PLMD::vesselbase::Vessel* (*)(PLMD::vesselbase::VesselOptions const&)> > 
>::_M_insert_unique_(std::_Rb_tree_const_iterator<std::pair<std::basic_string<char, 
std::char_traits<char>, std::allocator<char> > const, 
PLMD::vesselbase::Vessel* (*)(PLMD::vesselbase::VesselOptions const&)> >, 
std::pair<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > const, PLMD::vesselbase::Vessel* 
(*)(PLMD::vesselbase::VesselOptions const&)> const&)':
VesselRegister.cpp:(.text._ZNSt8_Rb_treeISsSt4pairIKSsPFPN4PLMD10vesselbase6VesselERKNS3_13VesselOptionsEEESt10_Select1stISB_ESt4lessISsESaISB_EE17_M_insert_unique_ESt23_Rb_tree_const_iteratorISB_ERKSB_[std::_Rb_tree<std::basic_string<char, 
std::char_traits<char>, std::allocator<char> >, 
std::pair<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > const, PLMD::vesselbase::Vessel* 
(*)(PLMD::vesselbase::VesselOptions const&)>, 
std::_Select1st<std::pair<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > const, PLMD::vesselbase::Vessel* 
(*)(PLMD::vesselbase::VesselOptions const&)> >, 
std::less<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > >, std::allocator<std::pair<std::basic_string<char, 
std::char_traits<char>, std::allocator<char> > const, 
PLMD::vesselbase::Vessel* (*)(PLMD::vesselbase::VesselOptions const&)> > 
>::_M_insert_unique_(std::_Rb_tree_const_iterator<std::pair<std::basic_string<char, 
std::char_traits<char>, std::allocator<char> > const, 
PLMD::vesselbase::Vessel* (*)(PLMD::vesselbase::VesselOptions const&)> >, 
std::pair<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > const, PLMD::vesselbase::Vessel* 
(*)(PLMD::vesselbase::VesselOptions const&)> const&)]+0x123): undefined 
reference to `std::_Rb_tree_decrement(std::_Rb_tree_node_base const*)'
VesselRegister.cpp:(.text._ZNSt8_Rb_treeISsSt4pairIKSsPFPN4PLMD10vesselbase6VesselERKNS3_13VesselOptionsEEESt10_Select1stISB_ESt4lessISsESaISB_EE17_M_insert_unique_ESt23_Rb_tree_const_iteratorISB_ERKSB_[std::_Rb_tree<std::basic_string<char, 
std::char_traits<char>, std::allocator<char> >, 
std::pair<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > const, PLMD::vesselbase::Vessel* 
(*)(PLMD::vesselbase::VesselOptions const&)>, 
std::_Select1st<std::pair<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > const, PLMD::vesselbase::Vessel* 
(*)(PLMD::vesselbase::VesselOptions const&)> >, 
std::less<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > >, std::allocator<std::pair<std::basic_string<char, 
std::char_traits<char>, std::allocator<char> > const, 
PLMD::vesselbase::Vessel* (*)(PLMD::vesselbase::VesselOptions const&)> > 
>::_M_insert_unique_(std::_Rb_tree_const_iterator<std::pair<std::basic_string<char, 
std::char_traits<char>, std::allocator<char> > const, 
PLMD::vesselbase::Vessel* (*)(PLMD::vesselbase::VesselOptions const&)> >, 
std::pair<std::basic_string<char, std::char_traits<char>, 
std::allocator<char> > const, PLMD::vesselbase::Vessel* 
(*)(PLMD::vesselbase::VesselOptions const&)> const&)]+0x20f): undefined 
reference to `std::_Rb_tree_increment(std::_Rb_tree_node_base const*)'
/usr/local/lib/plumed///src/config/ConfigInstall.o: In function 
`PLMD::config::getSoExt()':
ConfigInstall.cpp:(.text+0x15): undefined reference to 
`std::basic_string<char, std::char_traits<char>, std::allocator<char> 
>::basic_string(char const*, std::allocator<char> const&)'
/usr/local/lib/plumed///src/config/ConfigInstall.o: In function 
`PLMD::config::getPlumedRoot()':
ConfigInstall.cpp:(.text+0x3d): undefined reference to 
`std::basic_string<char, std::char_traits<char>, std::allocator<char> 
>::basic_string(char const*, std::allocator<char> const&)'
/usr/local/lib/plumed///src/config/ConfigInstall.o: In function 
`PLMD::config::getVersion()':
ConfigInstall.cpp:(.text+0x5f): undefined reference to 
`std::basic_string<char, std::char_traits<char>, std::allocator<char> 
>::basic_string(char const*, std::allocator<char> const&)'
/usr/local/lib/plumed///src/config/ConfigInstall.o: In function 
`PLMD::config::getVersionLong()':
ConfigInstall.cpp:(.text+0x81): undefined reference to 
`std::basic_string<char, std::char_traits<char>, std::allocator<char> 
>::basic_string(char const*, std::allocator<char> const&)'
/usr/local/lib/plumed///src/config/ConfigInstall.o: In function 
`PLMD::config::getVersionGit()':
ConfigInstall.cpp:(.text+0xa3): undefined reference to 
`std::basic_string<char, std::char_traits<char>, std::allocator<char> 
>::basic_string(char const*, std::allocator<char> const&)'
/usr/local/lib/plumed///src/config/ConfigInstall.o: In function `char* 
std::basic_string<char, std::char_traits<char>, std::allocator<char> 
>::_S_construct<char const*>(char const*, char const*, std::allocator<char> 
const&, std::forward_iterator_tag)':
ConfigInstall.cpp:(.text._ZNSs12_S_constructIPKcEEPcT_S3_RKSaIcESt20forward_iterator_tag[char* 
std::basic_string<char, std::char_traits<char>, std::allocator<char> 
>::_S_construct<char const*>(char const*, char const*, std::allocator<char> 
const&, std::forward_iterator_tag)]+0x36): undefined reference to 
`std::__throw_logic_error(char const*)'
ConfigInstall.cpp:(.text._ZNSs12_S_constructIPKcEEPcT_S3_RKSaIcESt20forward_iterator_tag[char* 
std::basic_string<char, std::char_traits<char>, std::allocator<char> 
>::_S_construct<char const*>(char const*, char const*, std::allocator<char> 
const&, std::forward_iterator_tag)]+0x55): undefined reference to 
`std::basic_string<char, std::char_traits<char>, std::allocator<char> 
>::_Rep::_S_empty_rep_storage'
ConfigInstall.cpp:(.text._ZNSs12_S_constructIPKcEEPcT_S3_RKSaIcESt20forward_iterator_tag[char* 
std::basic_string<char, std::char_traits<char>, std::allocator<char> 
>::_S_construct<char const*>(char const*, char const*, std::allocator<char> 
const&, std::forward_iterator_tag)]+0x73): undefined reference to 
`std::basic_string<char, std::char_traits<char>, std::allocator<char> 
>::_Rep::_S_empty_rep_storage'
ConfigInstall.cpp:(.text._ZNSs12_S_constructIPKcEEPcT_S3_RKSaIcESt20forward_iterator_tag[char* 
std::basic_string<char, std::char_traits<char>, std::allocator<char> 
>::_S_construct<char const*>(char const*, char const*, std::allocator<char> 
const&, std::forward_iterator_tag)]+0xa6): undefined reference to 
`std::basic_string<char, std::char_traits<char>, std::allocator<char> 
>::_Rep::_S_create(unsigned long, unsigned long, std::allocator<char> 
const&)'
ConfigInstall.cpp:(.text._ZNSs12_S_constructIPKcEEPcT_S3_RKSaIcESt20forward_iterator_tag[char* 
std::basic_string<char, std::char_traits<char>, std::allocator<char> 
>::_S_construct<char const*>(char const*, char const*, std::allocator<char> 
const&, std::forward_iterator_tag)]+0xc8): undefined reference to 
`std::basic_string<char, std::char_traits<char>, std::allocator<char> 
>::_Rep::_S_create(unsigned long, unsigned long, std::allocator<char> 
const&)'
collect2: ld returned 1 exit status
make[3]: *** 
[/home/xxx007/cp2k/cp2k/exe/Linux-x86-64-gfortran2/dbcsr_example_1.popt] 
Error 1
make[2]: *** [all] Error 2
make[1]: *** [popt] Error 2
make: *** [all] Error 2

I am using 64 bit ubuntu 12.04, and I have installed 64 bit version libz. 
So I am really confusing what is wrong with this compiling process. 

Hang Xiao 

PhD student
Room 829, Mudd Building
Department of Earth and Environmental Engineering
Columbia University
New York, NY, 10027
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