Error building libsmm
Abhishek Bagusetty
abhishek... at gmail.com
Wed Oct 29 02:48:45 UTC 2014
Hi Alfio,
I am trying to build the libsmm in cp2k-2.6 and it looks like there has
been some recent commits on that. I am trying to build the libsmm and when
I run the tiny1, the pbs jobs run but there are no output files (*.out)
generated in the /run_tiny_dnn/output_linux.intel/. It looks something is
wrong with my setup. I haven't changed any file. Do you have any pointers
that comes to the rescue.
Thanks for your time,
Abhishek
On Thursday, October 23, 2014 4:23:20 AM UTC-4, Alfio Lazzaro wrote:
>
> Probably I was too optimistic when I asked you to replace the gfortran
> with ifort...
> Let me explain the problem. The errors are due to the construct:
>
> ERROR STOP
>
> which is inside the file multrec_gen.f90 (lines 288 and 366). This is a
> 2008 Fortran construct and it appears that neither your ifort nor gfortran
> versions are supporting it.
> Then there is no way to compile it unless we change the code. I would ask
> you to restore gfortran as host compiler in the config/linux.intel, and
> then open the file multrec_gen.f90 and remove the keyword "ERROR" (keep
> STOP) in the two lines. Try this and see if it fixes the problem.
>
> I see also that "ERROR STOP" is used once in the file generate.bash file.
> You can remove from there too.
>
> Alfio
>
>
>
> Il giorno giovedì 23 ottobre 2014 06:54:24 UTC+2, Abhishek Bagusetty ha
> scritto:
>>
>> Thanks for figuring out the issue. I have used ifort instead of gfortran
>> and I still get a different set of errors.
>>
>> During the 3rd step ./generate -c config/linux.intel -j 20 -t 16 -w pbs
>> small1
>>
>> These are the set of errors which looks different to the earlier ones :
>>
>> multrec_gen.f90(267): error #5144: Invalid character_kind_parameter. No
>> underscore
>> IF (ANY(best_square<1)) ERROR STOP "tiny opts file needs
>> sufficiently many square sizes"
>>
>> ---------------------------------------------------------------------------------------------^
>> multrec_gen.f90(267): error #5082: Syntax error, found IDENTIFIER 'STOP'
>> when expecting one of: ( % : . = =>
>> IF (ANY(best_square<1)) ERROR STOP "tiny opts file needs
>> sufficiently many square sizes"
>> -----------------------------------^
>> multrec_gen.f90(331): error #5144: Invalid character_kind_parameter. No
>> underscore
>> ERROR STOP "MISSING CASE mult_versions"
>> ----------------------------------------------^
>> multrec_gen.f90(331): error #5082: Syntax error, found IDENTIFIER 'STOP'
>> when expecting one of: ( % : . = =>
>> ERROR STOP "MISSING CASE mult_versions"
>> -------------^
>> multrec_gen.f90(267): error #6404: This name does not have a type, and
>> must have an explicit type. [ERROR]
>> IF (ANY(best_square<1)) ERROR STOP "tiny opts file needs
>> sufficiently many square sizes"
>> -----------------------------^
>>
>> compilation aborted for multrec_gen.f90 (code 1)
>> More info :
>> ifort 11.1
>> ./generate cleanall is done before building with ifort.
>>
>> Thanks for your help.
>>
>> Abhishek
>>
>> On Wednesday, October 22, 2014 4:31:48 AM UTC-4, Alfio Lazzaro wrote:
>>>
>>> Ok, thanks. I can reproduce your error and I think I understood its
>>> source.
>>> It turns out that the compiler used for the compilation of the libsmm
>>> fortran files (gfortran 4.3 in my case) is the source of the problem.
>>> I think the easiest solution would be to change inside the file:
>>>
>>> build_libsmm/config/linux.intel
>>>
>>> the last line from:
>>>
>>> host_compile="gfortran -O2"
>>>
>>> to
>>>
>>> host_compile="ifort -O2"
>>>
>>> BTW, the error doesn't happen if I use gfortran 4.6.
>>>
>>> I hope this solves your problem.
>>>
>>> Alfio
>>>
>>>
>>> Il giorno mercoledì 22 ottobre 2014 01:44:25 UTC+2, Abhishek Bagusetty
>>> ha scritto:
>>>>
>>>> Please find the attachment for the tiny summary file.
>>>>
>>>> Abhishek
>>>>
>>>> On Tuesday, October 21, 2014 11:10:04 AM UTC-4, Alfio Lazzaro wrote:
>>>>>
>>>>> Interesting... Then it seems that the problem is in the small1 phase...
>>>>> Could you send me in attachment your tiny summary file? I will check
>>>>> what is wrong...
>>>>>
>>>>> Alfio
>>>>>
>>>>>
>>>>>
>>>>> Il giorno martedì 21 ottobre 2014 15:24:06 UTC+2, Abhishek Bagusetty
>>>>> ha scritto:
>>>>>>
>>>>>> I have checked the summary file tiny_gen_optimal_dnn_linux.intel.out
>>>>>> and it has 9 columns with 13824 lines with no sign of corrupted entries. On
>>>>>> the same lines, there are 13824 *.out files in
>>>>>> build_libsmm/run_tiny_dnn/output_linux.intel.
>>>>>>
>>>>>> It looks like we can rule out that there could be something wrong
>>>>>> with the summary file. I guess it would be worth informing that while
>>>>>> collecting results using tiny2 some of the *.out files were missing so I
>>>>>> had to run the tiny1 again to get the completion and tiny2 went smoothly. I
>>>>>> am not sure if this could have triggered this issue.
>>>>>>
>>>>>> let me know what you think on this.
>>>>>>
>>>>>> Thanks,
>>>>>> Abhishek
>>>>>>
>>>>>> On Tuesday, October 21, 2014 3:20:03 AM UTC-4, Alfio Lazzaro wrote:
>>>>>>>
>>>>>>> OK, the files from tiny1 are generated correctly (6 columns is OK
>>>>>>> for the tiny1 files). The 9 columns are for the summary file generated
>>>>>>> during the tiny2 phase in the the main directory. Look inside the main
>>>>>>> directory (build_libsmm) for the file tiny_gen_optimal_dnn_linux.intel.out.
>>>>>>> I suspect that this file has 3 columns (the first 3) in some lines (all
>>>>>>> lines must have 9 columns). BTW, if you hare using the default
>>>>>>> configuration for tiny1 matrix dimensions, then you should have 13824 *out
>>>>>>> files inside build_libsmm/run_tiny_dnn/output_linux.intel. You can check it
>>>>>>> by using
>>>>>>>
>>>>>>> > ls *.out | wc -l
>>>>>>>
>>>>>>> The same for the summary file:
>>>>>>>
>>>>>>> > wc -l tiny_gen_optimal_dnn_linux.intel.out
>>>>>>> 13824 tiny_gen_optimal_dnn_linux.intel.out
>>>>>>>
>>>>>>> We can have several possible errors:
>>>>>>> 1) some of the *.out files are missing or corrupted
>>>>>>> 2) the summary file is corrupted
>>>>>>>
>>>>>>> Let me know what you get from this investigation. Likely the problem
>>>>>>> is in the summary file...
>>>>>>>
>>>>>>> Alfio
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> Il giorno lunedì 20 ottobre 2014 22:54:39 UTC+2, Abhishek Bagusetty
>>>>>>> ha scritto:
>>>>>>>>
>>>>>>>> Hi Alfio,
>>>>>>>>
>>>>>>>> I have looked into the *.out files generated by the tiny1. I didn't
>>>>>>>> see 9 columns in the *.out but instead 6 columns.
>>>>>>>>
>>>>>>>> 1 1 1 1 0.441932 2.263
>>>>>>>> 1 1 1 7 0.242963 4.116
>>>>>>>> 1 1 17 1 0.370944 2.696
>>>>>>>> 1 3 1 1 0.249962 4.001
>>>>>>>> 1 3 1 7 0.544917 1.835
>>>>>>>> 1 5 1 1 0.267959 3.732
>>>>>>>> 1 15 1 1 0.498925 2.004
>>>>>>>> 2 1 1 1 0.441932 2.263
>>>>>>>>
>>>>>>>> This is the output from a file (tiny_find_xx_xx_xx.out) in
>>>>>>>> /build_libsmm/run_tiny_dnn/output_linux.intel/
>>>>>>>> I have modified the pbs.wlm file by getting rid of few options like
>>>>>>>> -lmppwidth and -lmppnppn which were not defined in the PBS for our cluster.
>>>>>>>> I am not sure how to investigate further. Do you have any pointers
>>>>>>>> on how to approach this ?
>>>>>>>>
>>>>>>>> Thank for your time.
>>>>>>>>
>>>>>>>> Abhishek
>>>>>>>>
>>>>>>>> On Monday, October 20, 2014 12:41:23 AM UTC-4, Alfio Lazzaro wrote:
>>>>>>>>>
>>>>>>>>> Hello Abhishek,
>>>>>>>>> could you check if the tiny2 phase is properly producing the tiny
>>>>>>>>> file? I mean, the error you are seeing is that the system is not able to
>>>>>>>>> read the tiny results during the small1 phase.
>>>>>>>>> The file should be something similar to:
>>>>>>>>>
>>>>>>>>> 1 1 1 1 1 1 1 0.447362 0.447
>>>>>>>>> 1 1 2 4 1 1 1 0.451188 0.887
>>>>>>>>> 1 1 3 3 1 1 1 0.484057 1.240
>>>>>>>>> 1 1 4 5 1 1 4 0.500210 1.599
>>>>>>>>> 1 1 5 6 1 1 5 0.548113 1.824
>>>>>>>>> 1 1 6 1 1 1 6 0.456724 2.190
>>>>>>>>>
>>>>>>>>> As you can see there are 9 columns. If you see only 3 (the first
>>>>>>>>> three ones) then there is something wrong during tiny1.
>>>>>>>>> The next step would be to investigate if the files *.out inside
>>>>>>>>> the tiny1 directory and then output directory are correct (you can post an
>>>>>>>>> example of .out file).
>>>>>>>>>
>>>>>>>>> Best regards,
>>>>>>>>>
>>>>>>>>> Alfio
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> Il giorno domenica 19 ottobre 2014 22:03:42 UTC+2, Abhishek
>>>>>>>>> Bagusetty ha scritto:
>>>>>>>>>>
>>>>>>>>>> Hi Users & Developers,
>>>>>>>>>>
>>>>>>>>>> I am trying to build libsmm small matrix multiplication library
>>>>>>>>>> and got an error while doing the 3rd step.
>>>>>>>>>>
>>>>>>>>>> Steps :
>>>>>>>>>> 1. ./generate -c config/linux.intel -j 100 -t 16 -w pbs tiny1
>>>>>>>>>> 2. ./generate -c config/linux.intel tiny2
>>>>>>>>>> 3. ./generate -c config/linux.intel -j 20 -t 16 -w pbs small1
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>> multrec_gen.f90:267.29:
>>>>>>>>>>
>>>>>>>>>> IF (ANY(best_square<1)) ERROR STOP "tiny opts file needs
>>>>>>>>>> sufficiently many
>>>>>>>>>>
>>>>>>>>>> 1
>>>>>>>>>>
>>>>>>>>>> Error: Cannot assign to a named constant at (1)
>>>>>>>>>>
>>>>>>>>>> multrec_gen.f90:331.7:
>>>>>>>>>>
>>>>>>>>>> ERROR STOP "MISSING CASE mult_versions"
>>>>>>>>>>
>>>>>>>>>> 1
>>>>>>>>>> Error: Unclassifiable statement at (1)
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>> It would be great, if anyone has any pointers to get a fix on
>>>>>>>>>> this issue.
>>>>>>>>>> Thanks,
>>>>>>>>>>
>>>>>>>>>> Abhishek
>>>>>>>>>> ------------------------------------------------------------
>>>>>>>>>> -----------------------------------------------
>>>>>>>>>> Abhishek Bagusetty
>>>>>>>>>> PhD Student, Computational Modeling & Simulation
>>>>>>>>>> Center for Simulation and Modeling
>>>>>>>>>> Department of Chemical & Petroleum Engineering
>>>>>>>>>> University of Pittsburgh
>>>>>>>>>> Pittsburgh, PA - 15261
>>>>>>>>>> Office : 920 Benedum Hall
>>>>>>>>>>
>>>>>>>>>> -----------------------------------------------------------------------------------------------------------
>>>>>>>>>>
>>>>>>>>>
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