SE MD in CP2K
bharat
bharats... at gmail.com
Tue Feb 18 20:07:10 UTC 2014
Hello Everyone,
I am trying to reproduce the results published on J. Phy. Chem. A by G.
Murdachaew et al. (http://pubs.acs.org/doi/abs/10.1021/jp110481m). I used
the similar control parameters described in the paper. The simulation is
for 64 water molecules. After 30 steps, structure is terribly going wrong.
O-H distance increases too much (>3Angstrom).
The initial coordinates are used
from http://pubs.acs.org/doi/abs/10.1021/jz401931f.
Please find input file, output file, and dcd file here.
https://drive.google.com/folderview?id=0B56PcAs22G9NdEd4eWh3ekFTd3c&usp=sharing
Can anyone help me to figure out where I am doing wrong?
Thank you.
Bharat
@SET CURR_I 01
#@SET SEED 1000
&EXT_RESTART
RESTART_FILE_NAME ./wt_bk_AM101-1.restart
&END EXT_RESTART
&GLOBAL
PROGRAM_NAME CP2K
PROJECT_NAME wt_bk_AM1${CURR_I}
RUN_TYPE MD
# SEED ${SEED}
PREFERRED_FFT_LIBRARY FFTW
# ECHO_INPUT YES
PRINT_LEVEL LOW
SAVE_MEM
&END GLOBAL
&MOTION
# &PRINT
# &FORCES
# FORMAT XMOL
# &END FORCES
# &END PRINT
&MD
ENSEMBLE NVT
STEPS 10000
TIMESTEP 0.50
TEMPERATURE 300
&THERMOSTAT
TYPE NOSE
REGION MASSIVE
&NOSE
LENGTH 3
YOSHIDA 3
TIMECON 100
MTS 2
&END NOSE
&END THERMOSTAT
&THERMAL_REGION
&PRINT
&TEMPERATURE
&EACH
MD 1
&END EACH
&END TEMPERATURE
&END PRINT
&END THERMAL_REGION
&PRINT
&ENERGY
&EACH
MD 1
&END EACH
&END ENERGY
&END PRINT
&END MD
&PRINT
&RESTART
&EACH
MD 1
&END EACH
&END RESTART
&RESTART_HISTORY OFF
&END RESTART_HISTORY
&TRAJECTORY LOW
FORMAT DCD
&EACH
MD 1
&END EACH
&END TRAJECTORY
&VELOCITIES OFF
&END VELOCITIES
&FORCES
&END FORCES
&END PRINT
&END MOTION
&FORCE_EVAL
METHOD QS
&DFT
&SCF
SCF_GUESS ATOMIC
EPS_SCF 1.0E-7
MAX_SCF 5000
&OUTER_SCF
MAX_SCF 10
&END OUTER_SCF
&OT
# Mingshun's scheme for PM6
PRECONDITIONER FULL_SINGLE_INVERSE
MINIMIZER DIIS
N_DIIS 9
&END OT
&PRINT
&RESTART
&EACH
MD 1
&END EACH
&END RESTART
&RESTART_HISTORY OFF
&END RESTART_HISTORY
&END PRINT
&END SCF
&QS
METHOD PM3
# My scheme
EPS_DEFAULT 1.0E-12
EXTRAPOLATION ASPC
EXTRAPOLATION_ORDER 3
&SE
# &PARAMETER
# @INCLUDE PARAM
# &END PARAMETER
&COULOMB
CUTOFF 10.0
RC_RANGE 0.5
# RC_TAPER 2
&END COULOMB
&SCREENING
RC_RANGE 0.5
&END SCREENING
&LR_CORRECTION
CUTOFF 6.0
RC_RANGE 0.5
&END LR_CORRECTION
&EXCHANGE
CUTOFF 8.0
RC_RANGE 0.5
&END EXCHANGE
&END SE
&END QS
&MGRID
COMMENSURATE
# CUTOFF 280
&END MGRID
&POISSON
POISSON_SOLVER PERIODIC
PERIODIC XYZ
&EWALD
&MULTIPOLES
MAX_MULTIPOLE_EXPANSION QUADRUPOLE
&END MULTIPOLES
EWALD_TYPE EWALD
ALPHA 0.5
GMAX 31
&END EWALD
&END POISSON
&PRINT
&E_DENSITY_CUBE
&EACH
MD 1
&END EACH
&END E_DENSITY_CUBE
&END PRINT
&END DFT
&SUBSYS
&CELL
ABC 12.4138 12.4138 12.4138
PERIODIC XYZ
&END CELL
&COORD
........................................
.........................................
........................................
.......................................
........................................
&END COORD
&END SUBSYS
&END FORCE_EVAL
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