Semiempirical QMMM calculation
bharat
bharats... at gmail.com
Tue Feb 18 14:37:54 UTC 2014
Hello CP2K experts,
I am trying to do semiempirical QMMM calculation. In this test calculation
I am using the water box of 64 water molecules. I use the coordinates of
the 64 water molecules obtained from M. D. Ben et al.
(http://pubs.acs.org/doi/abs/10.1021/jz401931f).
With this input, if I change geometry, I get "EMAX_SPLINE" is too small
error. For this particular 64-box water molecules, the SCF does not
conversed even for 5000 iteration.
This input file is based on the input in TEST directory of CP2K.
Can anybody provide me the QMMM input for water box or correct my input?
Thank you for the help.
Bharat
&FORCE_EVAL
METHOD QMMM
&DFT
&QS
METHOD AM1
EPS_DEFAULT 1.0E-12
EXTRAPOLATION ASPC
EXTRAPOLATION_ORDER 3
&SE
&PARAMETER
@INCLUDE PARAM
&END PARAMETER
&COULOMB
CUTOFF 10.0
RC_RANGE 0.5
# RC_TAPER 2
&END COULOMB
&SCREENING
RC_RANGE 0.5
&END SCREENING
&LR_CORRECTION
CUTOFF 6.0
RC_RANGE 0.5
&END LR_CORRECTION
&EXCHANGE
CUTOFF 10.0
RC_RANGE 0.5
&END EXCHANGE
&END SE
&END QS
&PRINT
&E_DENSITY_CUBE
&EACH
MD 1
&END EACH
&END E_DENSITY_CUBE
&END PRINT
&SCF
SCF_GUESS ATOMIC
EPS_SCF 1.0E-6
MAX_SCF 5000
&OUTER_SCF
MAX_SCF 10
&END OUTER_SCF
&OT
PRECONDITIONER FULL_SINGLE_INVERSE
MINIMIZER DIIS
N_DIIS 9
&END OT
&PRINT
&RESTART
&EACH
MD 1
&END EACH
&END RESTART
&RESTART_HISTORY OFF
&END RESTART_HISTORY
&END PRINT
&END SCF
&END DFT
&MM
&FORCEFIELD
&SPLINE
EMAX_SPLINE 1000
&END SPLINE
&BEND
ATOMS H O H
K 0.002
THETA0 1.823
&END BEND
&BOND
ATOMS O H
K 0.02
R0 1.89
&END BOND
&CHARGE
ATOM O
CHARGE -0.8476
&END CHARGE
&CHARGE
ATOM H
CHARGE 0.4238
&END CHARGE
&NONBONDED
&LENNARD-JONES
atoms O O
EPSILON 78.198
SIGMA 3.166
RCUT 11.4
&END LENNARD-JONES
&LENNARD-JONES
atoms O H
EPSILON 0.0
SIGMA 3.6705
RCUT 11.4
&END LENNARD-JONES
&LENNARD-JONES
atoms H H
EPSILON 0.0
SIGMA 3.30523
RCUT 11.4
&END LENNARD-JONES
&END NONBONDED
&END FORCEFIELD
&POISSON
&EWALD
EWALD_TYPE ewald
ALPHA .44
O_SPLINE 6
GMAX 21
&END EWALD
&END POISSON
&END MM
&QMMM
&CELL
ABC 6.0 6.0 6.0
&END CELL
NOCENTER
USE_GEEP_LIB 12
ECOUPL COULOMB
&QM_KIND H
MM_INDEX 2 3
&END QM_KIND
&QM_KIND O
MM_INDEX 1
&END QM_KIND
&PRINT
&QMMM_MATRIX
&END
&END
&END
&SUBSYS
&CELL
ABC 15.20 15.20 15.20
PERIODIC NONE
&END CELL
&COORD
................................
...............................
...............................
&END COORD
&END SUBSYS
&END FORCE_EVAL
&GLOBAL
PROJECT water-750
RUN_TYPE MD
PRINT_LEVEL LOW
&END GLOBAL
&MOTION
&MD
ENSEMBLE NVT
STEPS 10000
TIMESTEP 0.50
TEMPERATURE 298.15
&THERMOSTAT
TYPE NOSE
REGION GLOBAL
&NOSE
LENGTH 3
YOSHIDA 3
TIMECON 100
MTS 2
&END NOSE
&END THERMOSTAT
&THERMAL_REGION
&PRINT
&TEMPERATURE
&EACH
MD 1
&END EACH
&END TEMPERATURE
&END PRINT
&END THERMAL_REGION
&PRINT
&ENERGY
&EACH
MD 1
&END EACH
&END ENERGY
&END PRINT
&END MD
&PRINT
&RESTART
&EACH
MD 1
&END EACH
&END RESTART
&RESTART_HISTORY OFF
&END RESTART_HISTORY
&TRAJECTORY LOW
FORMAT XYZ
&EACH
MD 1
&END EACH
&END TRAJECTORY
&VELOCITIES OFF
&END VELOCITIES
&FORCES
&END FORCES
&END PRINT
&END MOTION
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