Building cp2k 2.4 with intel 13.1 and intel-mpi-4.1
Jason Wood
jwo... at gmail.com
Fri Feb 14 17:22:45 UTC 2014
Hi,
I have built cp2k 2.4 with the intel 13.1 compiler and intel mpi 4.1
but it fails 6 of the regression tests run using the
do_regtest script The (edited) output of the run is below. They all seem to
fail within mpi (or maybe one of the mpi
tasks fails causing the mpi error)
>>>>>>>>>>>>>>>>>
cp2k//TEST-Linux-x86-64-intel-popt-2014-02-14T16:55:37+0000/tests/QS
QS/C.inp RUNTIME FAIL
<<<<<<<<<<<<<<<<<
/cp2k//TEST-Linux-x86-64-intel-popt-2014-02-14T16:55:37+0000/tests/QS
2.00 sec
>>>>>>>>>>>>>>>>>
/cp2k//TEST-Linux-x86-64-intel-popt-2014-02-14T16:55:37+0000/tests/Fist/regtest-6
Fist/regtest-6/JAC_distr.inp RUNTIME FAIL
<<<<<<<<<<<<<<<<<
/cp2k//TEST-Linux-x86-64-intel-popt-2014-02-14T16:55:37+0000/tests/Fist/regtest-6
46.00 sec
>>>>>>>>>>>>>>>>>
/cp2k//TEST-Linux-x86-64-intel-popt-2014-02-14T16:55:37+0000/tests/Fist/regtest-5
Fist/regtest-5/JAC.inp RUNTIME FAIL
Fist/regtest-5/JAC_us.inp RUNTIME FAIL
Fist/regtest-5/JAC_gen.inp RUNTIME FAIL
<<<<<<<<<<<<<<<<<
/cp2k//TEST-Linux-x86-64-intel-popt-2014-02-14T16:55:37+0000/tests/Fist/regtest-5
68.00 sec
>>>>>>>>>>>>>>>>>
/cp2k//TEST-Linux-x86-64-intel-popt-2014-02-14T16:55:37+0000/tests/QS/regtest-gpw-2
QS/regtest-gpw-2/farming.inp RUNTIME FAIL
<<<<<<<<<<<<<<<<<
/cp2k//TEST-Linux-x86-64-intel-popt-2014-02-14T16:55:37+0000/tests/QS/regtest-gpw-2
125.00 se
/TEST-Linux-x86-64-intel-popt-2014-02-14T16:55:37+0000/QS/C.inp.out
SCF WAVEFUNCTION OPTIMIZATION
Step Update method Time Convergence Total energy
Change
------------------------------------------------------------------------------
rank 1 in job 1 cf-htc-156.htc.hpcwales.local_33638 caused collective
abort of all ranks
exit status of rank 1: killed by signal 9
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/cp2k//TEST-Linux-x86-64-intel-popt-2014-02-14T16:55:37+0000/Fist/regtest-5/JAC.inp.out
Restraints Information
Number of Intramolecular restraints:
0
Number of Intermolecular restraints:
0
************************** Velocities initialization
**************************
Initial Temperature
298.00 K
COM velocity: 0.000000000000 -0.000000000000
0.000000000000
*******************************************************************************
rank 1 in job 1 local_38226 caused collective abort of all ranks
exit status of rank 1: killed by signal 9
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/cp2k//TEST-Linux-x86-64-intel-popt-2014-02-14T16:55:37+0000/Fist/regtest-6/JAC_distr.inp.out
Number of Intramolecular restraints:
0
Number of Intermolecular restraints:
0
************************** Velocities initialization
**************************
Initial Temperature
298.00 K
COM velocity: 0.000000000000 -0.000000000000
0.000000000000
*******************************************************************************
rank 1 in job 1 local_57014 caused collective abort of all ranks
exit status of rank 1: killed by signal 9
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/cp2k//TEST-Linux-x86-64-intel-popt-2014-02-14T16:55:37+0000/Fist/regtest-5/JAC_us.inp.out
Restraints Information
Number of Intramolecular restraints:
0
Number of Intermolecular restraints:
0
************************** Velocities initialization
**************************
Initial Temperature
298.00 K
COM velocity: 0.000000000000 -0.000000000000
0.000000000000
*******************************************************************************
rank 1 in job 1 local_58434 caused collective abort of all ranks
exit status of rank 1: killed by signal 9
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xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
/cp2k//TEST-Linux-x86-64-intel-popt-2014-02-14T16:55:37+0000/QS/regtest-gpw-2/farming.inp.out
FARMING| number of slaves 2
FARMING| Number of created MPI (slave) groups:
1
FARMING| MPI (slave) process to group correspondence:
( 0 : 0) ( 1 : 0)
FARMING| List of jobs :
Job: 1 Dir: dir1 Input: C.inp MPI group: 0
Job: 2 Dir: dir1 Input: C.inp MPI group: 0
rank 1 in job 1 local_46331 caused collective abort of all ranks
exit status of rank 1: killed by signal 9
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xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
cp2k//TEST-Linux-x86-64-intel-popt-2014-02-14T16:55:37+0000/Fist/regtest-5/JAC_gen.inp.out
************************** Velocities initialization
**************************
Initial Temperature
298.00 K
COM velocity: -0.000000000000 -0.000000000000
-0.000000000000
*******************************************************************************
rank 1 in job 1 local_44569 caused collective abort of all ranks
exit status of rank 1: killed by signal 9
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--------------------------------- summary --------------------------------
number of FAILED tests 6
number of WRONG tests 0
number of CORRECT tests 0
number of NEW tests 88
number of tests 94
--------------------------------------------------------------------------
cp2k was built with the following ARCH
INTEL_MKL = /opt/intel/13.1.183/composer_xe_2013.4.183/mkl/
INTEL_INC = $(INTEL_MKL)/include/fftw
INTEL_LIB = $(INTEL_MKL)/lib/intel64
CC = cc
CPP =
FC = mpiifort
LD = mpiifort
AR = ar -r
DFLAGS = -D__INTEL -D__FFTSG -D__parallel -D__BLACS -D__SCALAPACK
-D__FFTW3 -D__LIBINT -D__LIBXC2 -D__LIBINT_MAX_AM=6 -D__LIBDERIV_MAX_AM1=5
CPPFLAGS = -C -traditional $(DFLAGS) -I$(INTEL_INC)
FCFLAGS = $(DFLAGS) -I$(INTEL_INC) -O1 -msse2 -fpp -free
FCFLAGS2 = $(DFLAGS) -I$(INTEL_INC) -O0 -msse2 -fpp -free
LDFLAGS = $(FCFLAGS) -I$(INTEL_INC)
LIBS = -L/cp2k/libxc/lib/ -lxc -L/cp2k/libint/lib/ -lderiv -lint
-L$(INTEL_LIB) -lfftw3 -lmkl_blas95_lp64 -lmkl_lapack95_lp64
-lmkl_scalapack_lp64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core
-lmkl_blacs_intelmpi_lp64 -lstdc++
OBJECTS_ARCHITECTURE = machine_intel.o
graphcon.o: graphcon.F
$(FC) -c $(FCFLAGS2) $<
=============================================================================================
Has anyone successfully tried this combination ? Have I done something
obviously wrong ?
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