[CP2K:4620] Re: energy drift in NPT MD simulation
Bonakala Satyanarayana
satyanaray... at gmail.com
Fri Sep 20 04:41:05 UTC 2013
Dear Seitsonen,
Thank you for your reply.
1) I performed NVT simulation with same input, what I have enclosed. It ran
well. These are the converged energy values:
ENERGY| Total FORCE_EVAL ( QS ) energy (a.u.):
-7812.764025944994501
ENERGY| Total FORCE_EVAL ( QS ) energy (a.u.):
-7812.749474147461115
ENERGY| Total FORCE_EVAL ( QS ) energy (a.u.):
-7812.722559495744463
ENERGY| Total FORCE_EVAL ( QS ) energy (a.u.):
-7812.689485930668525
ENERGY| Total FORCE_EVAL ( QS ) energy (a.u.):
-7812.657322690376532
ENERGY| Total FORCE_EVAL ( QS ) energy (a.u.):
-7812.631945457889742
ENERGY| Total FORCE_EVAL ( QS ) energy (a.u.):
-7812.616274832782437
ENERGY| Total FORCE_EVAL ( QS ) energy (a.u.):
-7812.609299468986137
2) I have taken cut-off as per literature (Elucidating the Breathing of the
Metal–Organic Framework MIL-53(Sc) with ab Initio Molecular Dynamics
Simulations and in Situ X-ray Powder Diffraction Experiments, Duren et al.,
JACS). Here, they have tested for MIL MOFs and reported optimum cut-off is
350 Ry.
Dear Hutter,
1) Yes, my system is stable in NVT simulation
2) Det( stress tensor) values are
Det(stress tensor) : -7.84528984E-04
Det(stress tensor) : -1.66559235E-02
Det(stress tensor) : -1.44160312E+00
Det(stress tensor) : 2.03287049E+02
Det(stress tensor) : -4.82023324E+03
Det(stress tensor) : 4.36251297E+07
BAROSTAT temperature is increasing:
BAROSTAT TEMP[K] = 0.250067070500E+03
BAROSTAT TEMP[K] = 0.407906043312E+05
BAROSTAT TEMP[K] = 0.373591928441E+06
BAROSTAT TEMP[K] = 0.458891514234E+08
3) SCF convergence is smooth. I enclosed the convergence vs steps
Thank you
B.Satyanarayana, Ph. D
Molecular modeling lab
JNCASR
Bangalore
On Thu, Sep 19, 2013 at 2:34 PM, Ari Paavo Seitsonen <
ari.p.s... at gmail.com> wrote:
> Dear Satyanarayana B,
>
> Indeed the energy does not "drift", it explodes. What did happen in an
> NVT simulation with otherwise the same input, did the simulation work fine?
>
> To me the cut-off energy of 350 Ry looks low, even with the PBE
> functional (smoother than BLYP); did you test that it is sufficient?
>
> Greetings from Zurich,
>
> apsi
>
> PS Does some one know, are the methods in &XC_GRID ... &END XC_GRID
> consistent with an NPT simulation?
>
>
> 2013/9/19 Matt W <MattWa... at gmail.com>
>
>> Hi,
>>
>> well your system is clearly exploding. Your cell_ref parameters look
>> inconsistent with your actual cell - maybe the stress tensor is very bad!
>>
>> &SUBSYS
>>
>>> &CELL
>>> ABC 21.8620 16.2099 43.6020
>>> ALPHA_BETA_GAMMA 90.0 92.7540 90.0
>>> &CELL_REF
>>> ABC 22.8620 17.2099 44.6020
>>> ALPHA_BETA_GAMMA 90.0 126.0 90.0
>>> &END CELL_REF
>>>
>>> &END CELL
>>>
>>> --
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>
>
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> Physikalisch-Chemisches Institut der Universität Zürich
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