constrained MD -- Energy jumps
Sandeep Kumar Reddy
kuma... at gmail.com
Mon Sep 2 09:58:14 UTC 2013
Dear all,
During the molecular dynamics run, I observed jumps in the
conserved quantity whenever i restart the job.
18 9.000000 0.003291412 346.448187872
-34.398876828 -34.394891510 3.902900000
19 9.500000 0.002977828 313.440816462
-34.398567684 -34.394883067 3.900500000
20 10.000000 0.002523418 265.610475339
-34.398112098 -34.394870566 3.893700000
*restarted*:
21 10.500000 0.002127386 111.962452875
-34.398151902 -34.395067307 7.674900000
22 11.000000 0.001942794 102.247529722
-34.397973939 -34.395065725 3.917000000
I tried switching off/on restart_constraint, but it didn't help much. I
have enclosed test files for your close inspection.
*Part of the input file:*
*
*
&MOTION
&MD
ENSEMBLE NVT
STEPS 10
TIMESTEP 0.5
&THERMOSTAT
&NOSE
LENGTH 3
YOSHIDA 3
TIMECON 100.0
MTS 2
&END NOSE
&END THERMOSTAT
TEMPERATURE 300.0
&END MD
&CONSTRAINT
&FIXED_ATOMS
LIST 1 2
&END FIXED_ATOMS
&END CONSTRAINT
&END MOTION
-----
I have tried few things, but none of them helped me. Can you please suggest
me what should i do to solve this problem.
Thanks.
Regards,
Sandeep
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