Why simulation with PBE functional is too slow?
huan... at mail.huji.ac.il
huan... at mail.huji.ac.il
Mon Oct 7 12:56:34 UTC 2013
Dear All,
I am now using CP2K to run MD simulations on the benzen-Zundel cation with
BLYP and PBE functional, respectively. I use the same number of CPU, but
for PBE functional, the speed is 3 times slower than BLYP. In addition, the
calculation with PBE functional takes nearly whole the memory, shown below.
For BLYP functional-- Mem: 64380M total, 16753M used, 47626M free
For PBE functional-- Mem: 64380M total, 63976M used, 403M free
Is that common for PBE functional?
Actually, I just copied the BLYP input file, and then changed the
functional into PBE and added long range correction, C9 term. The rest of
options, parameters, coordinates and basis sets are the same with BLYP
input file.
I pasted my input file below. Can anyone give me some suggestion? I
appreciate it very much.
Best wishes,
Huan
======== INPUT FILE ===========
&GLOBAL
PREFERRED_FFT_LIBRARY FFTW #FFTSG # FFTESSL
# FFT_POOL_SCRATCH_LIMIT 10
# PROGRAM Quickstep
PROJECT nve_50K # #
RUN_TYPE MD # # MD ## GEO_OPT ## ENERGY ----------
PRINT_LEVEL LOW
# SEED -6
&END GLOBAL
&FORCE_EVAL
&DFT
CHARGE 1
# UKS # ROKS with self-interaction correction (SIC)
UKS
&SIC
SIC_METHOD MAURI_SPZ
SIC_SCALING_A 0.2
SIC_SCALING_B 0.0
&END
# non-periodic Poisson (cluster boundary condition)
&POISSON
POISSON_SOLVER MT
&MT
ALPHA 7.0
REL_CUTOFF 2.0
&END MT
PERIODIC NONE
&END POISSON
BASIS_SET_FILE_NAME GTH_BASIS_SETS
POTENTIAL_FILE_NAME GTH_POTENTIALS
&MGRID
CUTOFF 300
&END MGRID
&PRINT
&MOMENTS ON
COMMON_ITERATION_LEVELS 20000
FILENAME ./MOMENTS
ADD_LAST NUMERIC
PERIODIC FALSE
REFERENCE COAC
&EACH 1
&END
&END MOMENTS
&LOCALIZATION ON
&TOTAL_DIPOLE
COMMON_ITERATION_LEVELS 20000
FILENAME ./TOTAL_DIPOLE.dat
ADD_LAST NUMERIC
PERIODIC FALSE
REFERENCE COAC
&EACH 1
&END
&END TOTAL_DIPOLE
# &MOLECULAR_DIPOLES
# COMMON_ITERATION_LEVELS 20000
# FILENAME ./MOLECULAR_DIPOLES.dat
# ADD_LAST NUMERIC
# PERIODIC FALSE
# REFERENCE COAC
# &EACH 1
# &END
# &END MOLECULAR_DIPOLES
&END LOCALIZATION
# &MO_CUBES
# NLUMO=1
# NHOMO=1
# &END MO_CUBES
# &MO
# EIGENVALUES T
# OCCUPATION_NUMBERS T
# COMMON_ITERATION_LEVELS 0
# EACH 1
# &END MO
# &E_DENSITY_CUBE
# &END E_DENSITY_CUBE
&MULLIKEN
&END MULLIKEN
&LOWDIN
&END LOWDIN
&END PRINT
&QS
EPS_DEFAULT 1.0E-12
EXTRAPOLATION PS
EXTRAPOLATION_ORDER 3
&END QS
&LOCALIZE T
EPS_LOCALIZATION 1.0E-4
EPS_OCCUPATION 1.E-6
OPERATOR BERRY
METHOD JACOBI
MAX_ITER 2000
MAX_CRAZY_ANGLE 0.05
&END LOCALIZE
&SCF
MAX_SCF 150
SCF_GUESS ATOMIC # ATOMIC # RESTART ---cont use RESTART
&MIXING
&END MIXING
&OT
MINIMIZER DIIS
#ROTATION TRUE #needed for ROKS+SIC!!
&END OT
&OUTER_SCF
MAX_SCF 20
EPS_SCF 1.0E-5
&END OUTER_SCF
&END SCF
&XC
&XC_FUNCTIONAL PBE #specified the functional
&END XC_FUNCTIONAL
&vdw_POTENTIAL
DISPERSION_FUNCTIONAL PAIR_POTENTIAL
&PAIR_POTENTIAL
TYPE DFTD3
REFERENCE_FUNCTIONAL PBE
CALCULATE_C9_TERM .TRUE.
REFERENCE_C9_TERM .TRUE.
LONG_RANGE_CORRECTION .TRUE.
PARAMETER_FILE_NAME dftd3.dat
R_CUTOFF 15.0
&END PAIR_POTENTIAL
&END vdW_POTENTIAL
&XC_GRID
XC_DERIV SPLINE2_SMOOTH
XC_SMOOTH_RHO NN10
&END XC_GRID
&END XC
&END DFT
&SUBSYS
&CELL
PERIODIC NONE
ABC 20.000 20.000 20.000
&END CELL
&COORD
C
C
C
C
C
C
H
H
H
H
H
H
H
H
O
H
O
H
H
Ar
&END COORD
&KIND H
BASIS_SET aug-TZVP-GTH
POTENTIAL GTH-PBE-q1
&END KIND
&KIND C
BASIS_SET aug-TZVP-GTH
POTENTIAL GTH-PBE-q4
&END KIND
&KIND O
BASIS_SET aug-TZVP-GTH
POTENTIAL GTH-PBE-q6
&END KIND
&KIND Ar
BASIS_SET DZVP-GTH
POTENTIAL GTH-PBE-q8
&END KIND
&END SUBSYS
&END FORCE_EVAL
&MOTION
&MD
ENSEMBLE NVE
STEPS 50000 #10ps total
TIMESTEP 0.2 # 0.2fs
TEMPERATURE 50.0
#TEMP_TOL 40.0
# &THERMOSTAT
# REGION MOLECULE
# &NOSE
# LENGTH 3
# YOSHIDA 3
# TIMECON 50.0
# MTS 2
# &END NOSE
# &END THERMOSTAT
&END MD
&PRINT
&RESTART
LOG_PRINT_KEY T
&EACH
MD 100
&END EACH
ADD_LAST NUMERIC
&END RESTART
&TRAJECTORY
LOG_PRINT_KEY T
FORMAT XYZ
UNIT angstrom
&EACH
MD 1
&END EACH
ADD_LAST NUMERIC
&END TRAJECTORY
&VELOCITIES
LOG_PRINT_KEY T
FORMAT XYZ
UNIT angstrom
&EACH
MD 1
&END EACH
ADD_LAST NUMERIC
&END VELOCITIES
&END PRINT
&END MOTION
================================
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