A memory leak?
Guanguri Qian
iqiang... at gmail.com
Sat Feb 2 02:28:03 UTC 2013
HI, all
I met a problem when running CP2K MD (version12507, Intel
composer_x3_2013.1.117 + intel MPI 4.1.0.024 + intel MKL + intel FFT on E5
intel CPU).
When the jobs are running, the free memory of the nodes will reduce
quickly! Then cp2k calculations will exit with segment fault.
To avoid the abuse of the restart files memory usage, SAVE_MEM is
set as .TRUE.. But it still doesnt work, the memory of the nodes reduced
quickly as well.
Any idea about the problem? Is this a memory leak, maybe from the intel
compile and libs?
Thanks a lot.
Bests
Guangrui
---------------------------------
INTEL_MKL=/opt/apps/intel/13/composer_xe_2013.1.117/mkl/
INTEL_INC=$(INTEL_MKL)/include/fftw
INTEL_LIB=$(INTEL_MKL)/lib/intel64
FFTW_LIB=/home/qian/Proc/fftw3xf/
CC = mpiicc
CPP =
FC = mpiifort
LD = mpiifort
AR = ar -r
DFLAGS = -D__INTEL -D__FFTSG -D__parallel -D__BLACS -D__SCALAPACK
-D__FFTW3
CPPFLAGS =
FCFLAGS = $(DFLAGS) -I$(INTEL_INC) -O3 -xhost -heap-arrays 64
-funroll-loops -fpp -free
FCFLAGS2 = $(DFLAGS) -I$(INTEL_INC) -O1 -msse2 -heap-arrays 64 -fpp -free
LDFLAGS = $(FCFLAGS) -I$(INTEL_INC)
LIBS = -L$(FFTW_LIB) -lfftw3xf_intel \
-L${INTEL_LIB} -I${INTEL_INC} -I${INTEL_INC}/intel64/lp64 -lmkl_blas95_lp64
\
-L${INTEL_LIB} -I${INTEL_INC} -I${INTEL_INC}/intel64/lp64
-lmkl_lapack95_lp64 \
${INTEL_LIB}/libmkl_scalapack_lp64.a -Wl,--start-group
${INTEL_LIB}/libmkl_intel_lp64.a ${INTEL_LIB}/libmkl_sequential.a
${INTEL_LIB}/libmkl_core.a ${INTEL_LIB}/libmkl_blacs_intelmpi_lp64.a
-Wl,--end-group -lpthread
OBJECTS_ARCHITECTURE = machine_intel.o
graphcon.o: graphcon.F
$(FC) -c $(FCFLAGS2) $<
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <https://lists.cp2k.org/archives/cp2k-user/attachments/20130201/b2d8db6b/attachment.htm>
More information about the CP2K-user
mailing list