Segmentation fault problem

Zhiping xuzh... at gmail.com
Sat Sep 15 20:02:35 UTC 2012


Dear all:
I compile cp2k using intel compiler and MKL 11.1.069. Parallel compilation 
is done with intel mpi 4.0.2.003.
While no error is reported during the compilation and I obtain the 
binaries. I found that serial executable works but the parallel one fails 
with 'Segmentation fault (174)' on the test runs.
I follow the threads in several forums and tries several tricks such as 
'ulimit -s unlimited', but still cannot get it working. Could anybody here 
give some suggestions?
Thank you.
Best,
Zhiping
--
App. 1: OUTPUT of uname 0a
Linux ln1 2.6.18-194.17.1.0.1.el5_lustre.1.8.5 #1 SMP Wed Aug 3 18:09:09 
CST 2011 x86_64 x86_64 x86_64 GNU/Linux

App. 2: FILE: Linux-x86_64-intel.popt
#
INTEL_INC=/apps/intel/Compiler/11.1/069/c/mkl/include/fftw 
INTEL_LIB=/apps/intel/Compiler/11.1/069/c/mkl/lib/em64t 
FFTW3_INC=/home/user/bin/lib/fftw3/include
FFTW3_LIB=/home/user/bin/lib/fftw3/lib
INT_INC=/home/user/bin/lib/libint/include
INT_LIB=/home/user/bin/lib/libint/lib

CC       = cc
CPP      = 
FC       = mpiifort
LD       = mpiifort
AR       = ar -r
DFLAGS   = -D__INTEL -D__FFTSG -D__parallel -D__BLACS -D__SCALAPACK 
-D__FFTW3 -D__LIBINT -D__HAS_NO_ISO_C_BINDING
CPPFLAGS = -C -traditional $(DFLAGS) -I$(INTEL_INC) -I$(INT_INC) 
-I$(FFTW3_INC)

FCFLAGS  = $(DFLAGS) -I$(INTEL_INC) -I$(INT_INC) -I$(FFTW3_INC) -O3 -xW 
-heap-arrays 64 -funroll-loops -fpp -free
FCFLAGS2 = $(DFLAGS) -I$(INTEL_INC) -I$(INT_INC) -I$(FFTW3_INC) -O1 -xW 
-heap-arrays 64 -fpp -free
LDFLAGS  = $(FCFLAGS) -I$(INTEL_LIB) -L$(INT_LIB) -L$(FFTW3_LIB)
LIBS     = $(LDFLAGS) -lmkl_scalapack_lp64 -lmkl_intel_lp64 
-lmkl_blacs_intelmpi_lp64 -lmkl_lapack95_lp64 -lmkl_sequential -lmkl_core 
-lguide -lfftw3 /home/user/bin/lib/libint/lib/libint_cpp_wrapper.o -lderiv 
-lint -lr12 -lstdc++

OBJECTS_ARCHITECTURE = machine_intel.o

graphcon.o: graphcon.F
        $(FC) -c $(FCFLAGS2) $<
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