umbrella sampling
Sandeep Kumar Reddy
kuma... at gmail.com
Fri Nov 18 05:06:08 UTC 2011
Dear all,
I would like to do umbrella sampling using cp2k. For this, i
have defined a collective variable and i used restraint option to put an
umbrella at CV value.
I wanted cp2k to print the value of collective variable at each MD step.
Can anybody help me which option does this job ?
Input file :
&FORCE_EVAL
METHOD Quickstep
&DFT
BASIS_SET_FILE_NAME BASIS_MOLOPT
POTENTIAL_FILE_NAME POTENTIAL
CHARGE = 0
&MGRID
CUTOFF 200
NGRIDS 5
REL_CUTOFF 40
&END MGRID
&QS
METHOD GPW
EPS_DEFAULT 1.0E-10
&END QS
&SCF
SCF_GUESS ATOMIC
EPS_SCF 1.0E-5
MAX_SCF 1000
# MIXING 0.3
&OUTER_SCF
EPS_SCF 1.0E-3
MAX_SCF 50
&END
&OT
MINIMIZER CG
PRECONDITIONER FULL_ALL
ENERGY_GAP 0.001
STEPSIZE 0.05
&END
&END SCF
&XC
&XC_FUNCTIONAL BLYP
&END XC_FUNCTIONAL
&vdW_POTENTIAL
DISPERSION_FUNCTIONAL PAIR_POTENTIAL
&PAIR_POTENTIAL
TYPE DFTD2
REFERENCE_FUNCTIONAL BLYP
&END PAIR_POTENTIAL
&END vdW_POTENTIAL
&XC_GRID
XC_SMOOTH_RHO NN50
XC_DERIV SPLINE2
&END
&END XC
&END DFT
&SUBSYS
&CELL
ABC 10.0 10.0 10.0
PERIODIC NONE
&END CELL
&COORD
@INCLUDE coor.xyz
&END COORD
&KIND O
BASIS_SET TZV2P-MOLOPT-GTH-q6
POTENTIAL GTH-BLYP-q6
&END KIND
&KIND C
BASIS_SET TZV2P-MOLOPT-GTH-q4
POTENTIAL GTH-BLYP-q4
&END KIND
&KIND H
BASIS_SET TZV2P-MOLOPT-GTH-q1
POTENTIAL GTH-BLYP-q1
MASS 2.016
&END KIND
&COLVAR
&TORSION
ATOMS 2 1 4 3
&END
&PRINT
&PROGRAM_RUN_INFO ON
&EACH
MD 1
&END
&END PROGRAM_RUN_INFO
&END PRINT
&END
&END SUBSYS
&END FORCE_EVAL
&GLOBAL
PROJECT OUT-CA-AS
RUN_TYPE MD
PRINT_LEVEL MEDIUM
&END GLOBAL
&MOTION
&CONSTRAINT
&CONSTRAINT_INFO
&EACH
MD 1
&END
&END
&COLLECTIVE
COLVAR 1
MOLECULE 1
TARGET 0.0
TARGET_GROWTH 0.001
TARGET_LIMIT 1.57
&RESTRAINT
K 10.0
&END
&END
&END
&PRINT
&VELOCITIES
&EACH
MD 1
&END
&END
&FORCES
&EACH
MD 1
&END
&END
&END
&MD
ENSEMBLE NVT
STEPS 4000
TIMESTEP 0.5
TEMPERATURE 298.15
&THERMOSTAT
TYPE CSVR
&CSVR
TIMECON [fs] 20.
&END
&END THERMOSTAT
&END MD
&END MOTION
Regards,
Sandeep
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