Antwort: [CP2K:3340] ERROR in topology_generate_molecule
Papy
bovi... at gmail.com
Thu Jun 30 09:42:19 UTC 2011
Yes but this keyword doesn't exist :(
On Jun 30, 11:15 am, hut... at pci.uzh.ch wrote:
> Hi
>
> so, have you used the REORDERING keyword as suggested in the
> error message?
>
> regards
>
> Juerg
>
> --------------------------------------------------------------
> Juerg Hutter Phone : ++41 44 635 4491
> Physical Chemistry Institute FAX : ++41 44 635 6838
> University of Zurich E-mail: hut... at pci.uzh.ch
> Winterthurerstrasse 190
> CH-8057 Zurich, Switzerland
> ---------------------------------------------------------------
>
> -----cp... at googlegroups.com schrieb: -----
> An: cp2k <cp... at googlegroups.com>
> Von: Papy
> Gesendet von: cp... at googlegroups.com
> Datum: 06/30/2011 11:11AM
> Betreff: [CP2K:3340] ERROR in topology_generate_molecule
>
> Hello,
>
> I am a neophyte in CP2K simulation. When a lauch the simulation I have
> this error :
>
> *******************************************
> *** ERROR in topology_generate_molecule ***
> *******************************************
>
> *** CP2K requires molecules to be contiguous and we have detected a
> non ***
> *** contiguous one!! In particular a molecule defined from index
> ( 1) ***
> *** to ( 8881) contains other molecules, not connected! Too late at
> this ***
> *** stage everything should be already ordered! If you have not
> yet ***
> *** employed the REORDERING keyword, please do so.It may help to fix
> this ***
> ***
> issue.
> ***
>
> ===== Routine Calling Stack =====
>
> 7 topology_generate_molecule
> 6 connectivity_control
> 5 topology_control
> 4 fist_init
> 3 fist_create_force_env
> 2 qmmm_create_force_env
> 1 CP2K
> CP2K| Abnormal program termination, stopped by process number 0
> ERROR: 0031-250 task 0: Terminated
>
> Thank you
>
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