using REFTRAJ
jadefox337
jadef... at gmail.com
Sun Jun 19 22:47:27 UTC 2011
Dear All,
I am trying to use REFTRAJ to read an already generated trajectory.
My understanding was that by supplying the trajectory *pos-1.xyz, the
new run would take in each conformation from the trajectory and would
compute the properties requested; in this case starting from
conformer 1, every 10th to the last (10000) - see MOTION/MD/REFTRAJ
section. Instead, I only get the first set of properties and the
program ends. I am sure that I have an error in my input file OR I
made an improper assumption about how REFTRAJ works.
Can someone help ? I am including here a sample input file.
Thanks much,
Madeleine
_____________________________
&GLOBAL
PROJECT x_dmd300myh2o
PREFERRED_FFT_LIBRARY FFTW
RUN_TYPE ENERGY_FORCE # ENERGY# MD ## GEO_OPT ##
PRINT_LEVEL LOW
&END GLOBAL
&FORCE_EVAL
METHOD QS
&DFT
&QS
EPS_DEFAULT 1.0E-12
EXTRAPOLATION PS
EXTRAPOLATION_ORDER 3
&END QS
CHARGE 0
BASIS_SET_FILE_NAME ../../../BASIS_SET
POTENTIAL_FILE_NAME ../../../POTENTIAL
&EXTERNAL_POTENTIAL
DX 1.00000000E-1 # controls speed of convergence
ERROR_LIMIT 1.00000000E-12
FUNCTION X*0.01
STATIC T # the only option available
&END EXTERNAL_POTENTIAL
&MGRID
CUTOFF 300
&END MGRID
&POISSON
POISSON_SOLVER MT
&MT
ALPHA 7.0
REL_CUTOFF 2.0
&END MT
PERIODIC NONE #NONE #XY
&END POISSON
&SCF
SCF_GUESS RESTART # ATOMIC # RESTART
MAX_SCF 30
EPS_SCF 1.0E-6
&OT
MINIMIZER DIIS
PRECONDITIONER FULL_KINETIC
&END OT
&OUTER_SCF T
MAX_SCF 10
EPS_SCF 1.0E-6
&END OUTER_SCF
&END SCF
&XC
&XC_FUNCTIONAL BLYP
&END XC_FUNCTIONAL
&XC_GRID
XC_SMOOTH_RHO NN10
XC_DERIV SPLINE2_SMOOTH
&END XC_GRID
&END XC
&PRINT
&DERIVATIVES
COMMON_ITERATION_LEVELS 10000
&EACH
&END EACH
FILENAME ./x_deriv
&END DERIVATIVES
&END PRINT
&LOCALIZE
EPS_LOCALIZATION 0.000001
METHOD JACOBI
&END LOCALIZE
&END DFT
&SUBSYS
&CELL
ABC [angstrom] 12.0 12.0 12.0
PERIODIC NONE
&END CELL
&COORD
UNIT angstrom
@INCLUDE 'first.xyz'
&END COORD
&KIND O
BASIS_SET DZVP-GTH-BLYP
POTENTIAL GTH-BLYP-q6
&END KIND
&END SUBSYS
&PRINT
&FORCES
FILENAME ./x_forces
COMMON_ITERATION_LEVELS 10000
&EACH
&END EACH
&END FORCES
&END PRINT
&END FORCE_EVAL
&MOTION
&MD
ENSEMBLE REFTRAJ
&REFTRAJ
&MSD T
&END MSD
EVAL_ENERGY_FORCES T
TRAJ_FILE_NAME dmd300myh2o-pos-1.xyz
FIRST_SNAPSHOT 1
STRIDE 10
LAST_SNAPSHOT 10000
&END REFTRAJ
STEPS 10000
&PRINT
FORCE_LAST
&END PRINT
&END MD
&END MOTION
&EXT_RESTART
# RESTART_FILE_NAME x_dmd300myh2o-1.restart
RESTART_COUNTERS T
RESTART_POS T
RESTART_VEL T
RESTART_RANDOMG T
&END
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