failing job:err 300
jadefox337
jadef... at gmail.com
Tue Jul 12 19:33:19 UTC 2011
Dear Weiyi,
Thank you for taking the time to answer. I have inspected the
configuration and it doesn't look like there
is overlap of atoms, but most of the waters are not in good
positions. BTW, I started from an optimized configuration of compound
+25 waters and to that I added waters until I got 60 waters.
I am attaching the most recent input file (in which I have commented
the section of MULTIPOLE (of which I was not sure if I needed it for
periodic boundary cond). After that change I ran and failed again
with the following error - obviously things do not converge... Maybe
I should try first to optimize without vdw - Grimme ?
_____________________________
SCF WAVEFUNCTION OPTIMIZATION
Step Update method Time Convergence Total
energy Change
------------------------------------------------------------------------------
1 P_Mix/Diag. 0.40E+00 533.8 5.0615E+10
******************** 2.48E+43
2 P_Mix/Diag. 0.40E+00 621.9 1.8584E+12 ********************
-1.74E+51
=>> PBS: job killed: walltime 1821 exceeded limit 1800
Terminated mpirun: killing job...
--------------------------------------------------------------------------
mpirun noticed that process rank 0 with PID 3099 on node c0745 exited
on signal 0 (Unknown signal 0).
--------------------------------------------------------------------------
mpirun: clean termination accomplished
32 total processes killed (some possibly by mpirun during cleanup)
----------------------------------------------------------------
Jobs exit status code is 143
Job dMin60watCis/1063310.cvrsvc09-ib completed Mon Jul 11 15:44:31 PDT
2011
_____________________
Here is the input file:
&GLOBAL
PROJECT dMin60watCello # #
RUN_TYPE GEO_OPT # ENERGY# MD ## GEO_OPT ##
PRINT_LEVEL LOW
&END GLOBAL
&FORCE_EVAL
METHOD QS
&DFT
&POISSON
POISSON_SOLVER PERIODIC
# &MULTIPOLE
# ANALYTICAL_GTERM .TRUE.
# EWALD_PRECISION 1.00000000E-08
# RCUT 30.0
# &END MULTIPOLE
PERIODIC XYZ #NONE #XY
&END POISSON
BASIS_SET_FILE_NAME ../../BASIS_SET
POTENTIAL_FILE_NAME ../../POTENTIAL
&MGRID
CUTOFF 300
&END MGRID
&PRINT
&LOCALIZATION
&END LOCALIZATION
&END PRINT
&QS
EPS_DEFAULT 1.0E-12
EXTRAPOLATION PS
EXTRAPOLATION_ORDER 3
# OT
&END QS
&SCF
SCF_GUESS ATOMIC # ATOMIC # RESTART
&END SCF
&XC
&XC_FUNCTIONAL BLYP
&END XC_FUNCTIONAL
&VDW_POTENTIAL
POTENTIAL_TYPE PAIR_POTENTIAL
&PAIR_POTENTIAL
TYPE DFTD3
CALCULATE_C9_TERM .TRUE.
PARAMETER_FILE_NAME ../../dftd3.dat
REFERENCE_FUNCTIONAL PBE
R_CUTOFF 16.
EPS_CN 0.01
&END PAIR_POTENTIAL
&END VDW_POTENTIAL
&XC_GRID
XC_DERIV SPLINE2_SMOOTH
XC_SMOOTH_RHO NN10
&END XC_GRID
&END XC
&END DFT
&SUBSYS
&CELL
ABC [angstrom] 15.0 15.0 15.0
PERIODIC xyz
&END CELL
&COORD
UNIT angstrom
@INCLUDE 'cello60wat.xyz'
&END COORD
&KIND H
BASIS_SET DZVP-GTH-BLYP
MASS 1.0
POTENTIAL GTH-BLYP-q1
&END KIND
&KIND C
BASIS_SET DZVP-GTH-BLYP
POTENTIAL GTH-BLYP-q4
&END KIND
&KIND O
BASIS_SET DZVP-GTH-BLYP
POTENTIAL GTH-BLYP-q6
&END KIND
&END SUBSYS
&END FORCE_EVAL
&EXT_RESTART
# RESTART_FILE_NAME dMin25watCello-1.restart
RESTART_COUNTERS T
RESTART_POS T
RESTART_VEL T
# RESTART_NOSE T
RESTART_RANDOMG T
&END
___________________________
Thanks to anyone willing to have a look and give some advise.
Madeleine
On Jul 11, 11:47 am, "Irene H." <hwyi... at gmail.com> wrote:
> Dear Madeleine,
>
> Could you also post your input file here? From the error message in the
> output alone, it's difficult to locate the problem. Usually an error in
> cholesky decompostion means the charge density is not good. In your case one
> possibility is that there are overlapping atoms, either within the
> simulation cell, or between images in neighboring replicated cells. Have you
> checked that the cell is large enough to incorporate all the molecules?
>
> Best,
> Weiyi
>
> On Mon, Jul 11, 2011 at 2:16 PM, jadefox337 <jadef... at gmail.com> wrote:
> > Dear all,
>
> > I am attempting for the first time to run a geometry optimization for
> > large data set with periodic boundary conditions. My data set is
> > large - 225 atoms and I never did PBC. My job fails with the
> > following message:
> > ____________________________________________________________
> > OPTIMIZATION STEP: 1
> > --------------------------
>
> > Number of
> > electrons: 616
> > Number of occupied
> > orbitals: 308
> > Number of molecular
> > orbitals: 308
>
> > Number of orbital
> > functions: 1789
> > *
> > *** 09:50:27 ERRORL2 in cp_fm_cholesky:cp_fm_cholesky_decompose
> > processor ***
> > *** 0 err=-300 condition FAILED at line
> > 92 ***
> > *
>
> > ===== Routine Calling Stack =====
>
> > 8 cp_fm_cholesky_decompose
> > 7 init_scf_run
> > 6 qs_energies_scf
> > 5 qs_forces
> > 4 cp_eval_at
> > 3 geoopt_bfgs
> > ________________________________
>
> > Can someone advise on where should I start looking for the problem
> > (other that the code itself - with which I am not really familiar).
>
> > Thanks you,
>
> > Madeleine
>
> > --
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>
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