installation of CP2k with HPMPI
Sandeep Kumar Reddy
kuma... at gmail.com
Thu Jul 7 13:10:44 UTC 2011
Dear all,
I tried to install cp2k with intel compilers, MKL libraries
version 11.1 . I got it compiled sucessfully. But when i try to run it,
it terminated with following error ?
*** Conversion factors ***
[u] -> [a.u.]
1.82288848426455E+03
[Angstrom] -> [Bohr] = [a.u.]
1.88972613288564E+00
[a.u.] = [Bohr] -> [Angstrom]
5.29177208590000E-01
[a.u.] -> [s]
2.41888432650478E-17
[a.u.] -> [fs]
2.41888432650478E-02
[a.u.] -> [J]
4.35974393937059E-18
[a.u.] -> [K]
3.15774647902944E+05
[a.u.] -> [kJ/mol]
2.62549961709828E+03
[a.u.] -> [kcal/mol]
6.27509468713739E+02
[a.u.] -> [Pa]
2.94210107994716E+13
[a.u.] -> [bar]
2.94210107994716E+08
[a.u.] -> [atm]
2.90362800883016E+08
[a.u.] -> [eV]
2.72113838565563E+01
[a.u.] -> [Hz]
6.57968392072181E+15
[a.u.] -> [1/cm] (wave numbers)
2.19474631370540E+05
[a.u./Bohr**2] -> [1/cm]
5.14048714338585E+03
forrtl: severe (174): SIGSEGV, segmentation fault occurred
Image PC Routine Line
Source
libmpi.so.1 00002AC22FF2802E Unknown Unknown Unknown
cp2k.popt 0000000003965C4C Unknown Unknown Unknown
cp2k.popt 000000000395F553 Unknown Unknown Unknown
cp2k.popt 000000000395F418 Unknown Unknown Unknown
cp2k.popt 0000000001CC62A9 Unknown Unknown Unknown
cp2k.popt 00000000011393FF Unknown Unknown Unknown
cp2k.popt 000000000083E5DE Unknown Unknown Unknown
cp2k.popt 000000000084335C Unknown Unknown Unknown
cp2k.popt 0000000000906265 Unknown Unknown Unknown
cp2k.popt 00000000004791CE Unknown Unknown Unknown
cp2k.popt 00000000004270AC Unknown Unknown Unknown
cp2k.popt 0000000000430951 Unknown Unknown Unknown
cp2k.popt 00000000004248E6 Unknown Unknown Unknown
cp2k.popt 0000000000422DDC Unknown Unknown Unknown
libc.so.6 00002AC23057C8B4 Unknown Unknown Unknown
cp2k.popt 0000000000422CE9 Unknown Unknown Unknown
---------------
I could install serial version and ran it well. Is this error any thing to
do with exporting hpmpi libraries ?
Following is the makefile.
INTEL_MKL = /sfs1/intel_122009/Compiler/11.1/059/mkl
INTEL_INC_1 = /sfs1/intel_122009/Compiler/11.1/059/mkl/include/em64t/lp64
INTEL_INC_2 = /sfs1/intel_122009/Compiler/11.1/059/mkl/include/
INTEL_LIB = /sfs1/intel_122009/Compiler/11.1/059/mkl/lib/em64t
MKLPATH = /sfs1/intel_122009/Compiler/11.1/059/mkl/lib/em64t
FFT_INC=/sfs1/intel_122009/Compiler/11.1/059/mkl/include/fftw
CC = cc
CPP =
FC = /opt/hpmpi/bin/mpif90
LD = /opt/hpmpi/bin/mpif90
AR = ar -r
DFLAGS = -D__INTEL -D__FFTSG -D__parallel -D__BLACS -D__SCALAPACK
-D__FFTW3
CPPFLAGS =
FCFLAGS = $(DFLAGS) -I$(INTEL_INC_1) -I$(INTEL_INC_2) -I$(FFT_INC) -O0
-xHost -heap-arrays 64 -funroll-loops -fpp -free
FCFLAGS2 = $(DFLAGS) -I$(INTEL_INC_1) -I$(INTEL_INC_2)-O0 -xHost
-heap-arrays 64 -fpp -free
LDFLAGS = $(FCFLAGS) -I$(INTEL_INC_1) -I$(INTEL_INC_2)
LIBS = -L$(MKLPATH) $(MKLPATH)/libmkl_scalapack_lp64.a \
$(MKLPATH)/libmkl_solver_lp64_sequential.a -Wl,--start-group \
$(MKLPATH)/libmkl_intel_lp64.a $(MKLPATH)/libmkl_sequential.a \
$(MKLPATH)/libmkl_core.a $(MKLPATH)/libmkl_blacs_intelmpi_lp64.a \
$(MKLPATH)/libmkl_blacs_intelmpi_lp64.a \
$(MKLPATH)/libfftw3xf_intel.a -Wl,--end-group -lpthread
I tried alot but couldn't hold off this error. Can somebody help me ?
Thanks.
Regards,
Sandeep
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