[CP2K:2694] single point problem
Laino Teodoro
teodor... at gmail.com
Sat May 1 20:47:18 UTC 2010
The code is probably working but since you say that it is a big
molecule it may just be that :
-) computer is swapping
-) takes lot of time on 1 CPU
Probably just running with a parallel CP2K version should help you to
have this molecule ready for monday.
Teo
On 1 May 2010, at 22:38, alican wrote:
> I want my molecule to have a single point and use the script below to
> work it. It starts normally, however, when i watch the output file as
> the process works on, i see only
>
> CP2K| version string: CP2K version 2.1.131
> (Development Version)
> CP2K| is freely available from http://
> cp2k.berlios.de/
> CP2K| Program compiled at Sun Jan 17
> 20:42:43 EET 2010
> CP2K| Program compiled on
> headnode.chem.boun.edu.tr
> CP2K| Program compiled for Linux-
> x86-64-g95
> CP2K| Last CVS entry
> CP2K| Input file name
> input.inp
> ali... at headnode.chem.boun.edu.tr has created process number
> 0 7575
>
> **** **** ****** ** PROGRAM STARTED AT 2010-04-30
> 01:00:06.339
> ***** ** *** *** ** PROGRAM STARTED ON
> headnode.chem.boun.edu.tr
> ** **** ****** PROGRAM STARTED
> BY alican
> ***** ** ** ** ** PROGRAM PROCESS
> ID 7575
> **** ** ******* ** PROGRAM STARTED IN /home/alican/
> CP2K_TUTORIAL/sp
>
> CP2K| version string: CP2K version 2.1.131
> (Development Version)
> CP2K| is freely available from http://
> cp2k.berlios.de/
> CP2K| Program compiled at Sun Jan 17
> 20:42:43 EET 2010
> CP2K| Program compiled on
> headnode.chem.boun.edu.tr
> CP2K| Program compiled for Linux-
> x86-64-g95
> CP2K| Last CVS entry
> CP2K| Input file name
> input.inp
>
> writing and job seems to be running but does not work further and
> finishes in some time.
>
> The script i use is
>
> &GLOBAL
> PROJECT dene
> RUN_TYPE ENERGY
> PRINT_LEVEL LOW
> &END GLOBAL
> &FORCE_EVAL
> METHOD Quickstep
> &DFT
> LSD
> &MGRID
> CUTOFF 158
> &END MGRID
> &QS
> METHOD PM3
> &SE
> &COULOMB
> CUTOFF [angstrom] 80.0
> &END
> &EXCHANGE
> CUTOFF [angstrom] 80.0
> &END
> &END
> &END QS
> &SCF
> SCF_GUESS ATOMIC
> &END SCF
> &END DFT
> &SUBSYS
> &CELL
> ABC 80 80 80
> &END CELL
> &TOPOLOGY
> COORDINATE PDB
> COORD_FILE_NAME dene.pdb
> CONNECTIVITY OFF
> &END
> &END SUBSYS
> &END FORCE_EVAL
>
> My molecule is http://www.2shared.com/file/a81wGuji/dene.html . It is
> quite too big and i thing problem has something to do with it.. I
> can't find any way to work it and i have to work it until Monday, it
> is a really urgent problem.
>
> Thank you for your help from now..
>
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