Weird forces
Kyle
kyle... at gmail.com
Thu Mar 11 20:04:44 UTC 2010
Dear experts,
Here's the information about our platform:
kernel :SMP 2.6.18-128 x86-64
compiler suite :Gnu 4.4.0-6 for C, C++, Fortran 77/90
BLAS/LAPACK : using Intel MKL 11.0.083 for x86-64
FFT library :FFTW 3.2.2
ScaLAPACK : 1.8, installed using the Python ScaLAPACK installer script
MPI libraries : we used two libraries: OpenMPI 1.4.1 and MPICH2
1.2.1. Neither of them worked well, and they gave apparently
different forces.
The cluster network is Infiniband-based, but this may not matter
because the error occurs even when running MPI job with a single
processor.
Here are the makefiles that we used to compile:
When using MPICH2:
----------------------------------------------------------------------------------------------
CC = gcc44
CPP =
FC = /share/apps/cp2k/mpich/bin/mpif90 -I/share/apps/cp2k/
fftw-3.2.2/include/
LD = /share/apps/cp2k/mpich/bin/mpif90 -L/share/apps/cp2k/
fftw-3.2.2/lib/ -L/share/apps/cp2k/scalapack/lib
AR = ar -r
CPPFLAGS =
DFLAGS = -D__GFORTRAN -D__FFTSG -D__FFTW3 -D__parallel -D__BLACS -
D__SCALAPACK
FCFLAGS = -O2 -ffast-math -funroll-loops -ftree-vectorize -
march=native -ffree-form $(DFLAGS)
LDFLAGS = $(FCFLAGS)
LIBS = -lscalapack -lblacs -lblacsC -lblacsF77 -lblacs -
lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lfftw3
OBJECTS_ARCHITECTURE = machine_gfortran.o
----------------------------------------------------------------------------------------------
When using OpenMPI:
----------------------------------------------------------------------------------------------
CC = gcc4.4
CPP =
FC = mpif90 -I/share/apps/cp2k/fftw-3.2.2/include/
LD = mpif90 -L/share/apps/cp2k/fftw-3.2.2/lib/ -L/share/apps/
scalapack/lib
AR = ar -r
CPPFLAGS =
DFLAGS = -D__GFORTRAN -D__FFTSG -D__FFTW3 -D__parallel -D__BLACS -
D__SCALAPACK
FCFLAGS = -O2 -ffast-math -funroll-loops -ftree-vectorize -
march=native -ffree-form $(DFLAGS)
LDFLAGS = $(FCFLAGS)
LIBS = -lscalapack -lblacs -lblacsC -lblacsF77 -lblacs -
lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lfftw3
OBJECTS_ARCHITECTURE = machine_gfortran.o
----------------------------------------------------------------------------------------------
Please let me know if any other information is needed. We'll really
appreciate your help.
Thanks,
Best regards,
Kyle
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