fes.sopt error
yimanu
duu... at gmail.com
Tue Jan 26 21:24:43 UTC 2010
This is what I get from just running fes
USAGE:
graf
[-ngrid 50 .. ..] (Mesh dimension. Default :: 100)
[-dp 0.05 .. ..] (Alternative to -ngrid, allows the specification
of the mesh dx)
[-ndim 3 ] (Number of collective variables NCV)
[-ndw 1 3 .. ] (CVs for the free energy surface)
[-periodic 2 3 ..] (CVs with periodic boundary conditions (-
pi,pi] )
[-stride 10 ] (How often the FES is written)
[-fix 1.1 .. ..] (Define the region for the FES)
(If omitted this is automatically calculated)
[-cutoff 2. ] (The hills are cutoffed at 2)
[-file filename]
[-out filename]
[-orac] (If energies are written in orac intern units)
[-cp2k] (Specify if a CP2K restart file is provided)
[-cpmd] (Specify if CPMD colvar_mtd and parvar_mtd are
provided)
(With CPMD you do not need to specify -file,
parvar_mtd and
colvar_mtd are expected to be present in the
working directory)
[-mathlab] (File storing FES in Mathlab format. Default
format Gnuplot)
[-find-minima] (Tries to finds all minima in the computed FES)
[-find-path] (Finds MEP between all minima (found) in the
computed FES)
[-point-a] (Specifies point (a) when using -find-path
option)
[-point-b] (Specifies point (b) when using -find-path
option)
DEFAULT OUTPUT: fes.dat
STOP Please provide arguments to run FES!
I will attack the gzipped file on the main page
Thanks
Lekpa
On Jan 26, 2:17 pm, Teodoro Laino <teodor... at gmail.com> wrote:
> could you please attach as well your restart file (please gzip first).
> Thanks
> Teo
>
> Lekpa Duukori wrote:
> > Hi all,
>
> > I am trying to use fes.sopt on a restart but I get the following error
>
> > fes.sopt -cp2k -ndim 3 -ndw 1 3 -file 2hno3_dftb_mtd_3cv-1.restart
>
> > **********************************************************************
> > FES| Parsing file: <2hno3_dftb_mtd_3cv-1.restart>
>
> > At line 374 of file
> > /opt/cp2k_gfortran/makefiles/../tools/metadyn/graph.F (unit = 10, file
> > = '2hno3_dftb_mtd_3cv-1.restart')
> > Fortran runtime error: End of file
>
> > fes.sopt was compiled using make fes.sopt ARCH=Linux-x86-64-gfortran
> > VERSION=sopt on a cp2k gfortran compilation from the CVS snapshot of
> > 2010-01-21
>
> > Using several other intermediate restart files does not help, so I am
> > guessing that somehow fes.sopt was not properly compiled or maybe my
> > cp2k compilation is not writing what fes.sopt expects.
>
> > Any thoughts is appreciated.
>
> > Thanks!
>
> > Lekpa
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