Energy drift while using constraints with FIST
yimanu
duu... at gmail.com
Wed Aug 18 20:37:35 UTC 2010
Hi all,
I want to do qmmm so I am starting with mm equilibration with fist. I
want to fix all bonds involving hydrogen so I am using an HBONDS
section but I get an energy drift. I have played with several
parameters, eg &SPLINE section parametrs, cutoff, force constant for
constraint etc with no solution so any pointers is welcome. Thanks my
input is pasted below and I am using a 3 week old cp2k compile.
Many thanks.
Yimanu
&GLOBAL
PRINT_LEVEL LOW
PREFERRED_FFT_LIBRARY FFTSG
PROJECT hyp_small
RUN_TYPE MD
&END GLOBAL
&MOTION
&MD
ENSEMBLE NVT
STEPS 6000000
TIMESTEP 0.5
TEMPERATURE 298.0
&THERMOSTAT
TYPE NOSE
#REGION MASSIVE
&NOSE
TIMECON [wavenumber_t] 1000
&END NOSE
&END THERMOSTAT
&PRINT
&ENERGY
FILENAME =hyp_small.md.ener
&EACH
MD 1
&END EACH
&END ENERGY
&PROGRAM_RUN_INFO
&EACH
MD 1
&END EACH
&END PROGRAM_RUN_INFO
&END PRINT
&END MD
&PRINT
&TRAJECTORY
FILENAME =hyp_small.md.xyz
&EACH
MD 100
&END EACH
&END TRAJECTORY
&RESTART
FILENAME =hyp_small.md.restart
BACKUP_COPIES 3
&EACH
MD 10
&END EACH
&END RESTART
&RESTART_HISTORY OFF
&END RESTART_HISTORY
&END PRINT
# &CONSTRAINT
# &FIXED_ATOMS
# QM_SUBSYS MOLECULAR
# &END FIXED_ATOMS
# &HBONDS
# ATOM_TYPE OW OO CT
# MOLNAME WAT1 .. WAT541 AHM
# MOLECULE 1..542
# &RESTRAINT
# K [kcalmol] 5.0
# &END RESTRAINT
# &END HBONDS
# &END CONSTRAINT
&END MOTION
&FORCE_EVAL
# METHOD QMMM
METHOD FIST
&MM
&FORCEFIELD
parm_file_name model.top
parmtype AMBER
VDW_SCALE14 0.50
EI_SCALE14 0.833333
&SPLINE
EMAX_SPLINE 1.0
RCUT_NB 10.0
#UNIQUE_SPLINE T
EMAX_ACCURACY 1.00E-6
EPS_SPLINE 1.00E-10
&END SPLINE
&END FORCEFIELD
&POISSON
&EWALD
EWALD_TYPE spme
ALPHA .37
GMAX 31 31 31
&END EWALD
&END POISSON
&END MM
&DFT
BASIS_SET_FILE_NAME GTH_BASIS_SETS
POTENTIAL_FILE_NAME POTENTIAL
WFN_RESTART_FILE_NAME RESTART
&MGRID
CUTOFF 280
COMMENSURATE
&END MGRID
&SCF
MAX_SCF 50
EPS_SCF 1.0E-7
SCF_GUESS RESTART
&OUTER_SCF
EPS_SCF 1.0E-7
MAX_SCF 10
&END
&OT T
MINIMIZER DIIS
N_DIIS 7
&END OT
&PRINT
&RESTART
FILENAME =RESTART
&END RESTART
&RESTART_HISTORY OFF
&END RESTART_HISTORY
&END PRINT
&END SCF
&QS
EPS_DEFAULT 1.0E-14
MAP_CONSISTENT
EXTRAPOLATION ASPC
&END QS
&XC
# &XC_GRID
# XC_SMOOTH_RHO NN10
# XC_DERIV SPLINE2_SMOOTH
# &END XC_GRID
&XC_FUNCTIONAL BLYP
&END XC_FUNCTIONAL
# &vdW_POTENTIAL
# DISPERSION_FUNCTIONAL PAIR_POTENTIAL
# &PAIR_POTENTIAL
# R_CUTOFF 40.0
# TYPE PAIR_POTENTIAL
# &END PAIR_POTENTIAL
# &END vdW_POTENTIAL
&END XC
# &POISSON
# POISSON_SOLVER MT
# PERIODIC NONE
# &MT
# ALPHA 7.0
# REL_CUTOFF 2.0
# &END MT
# &END POISSON
&END DFT
&QMMM
E_COUPL GAUSS
USE_GEEP_LIB 10
&CELL
ABC 16.0 16.0 16.0
PERIODIC XYZ
&END CELL
&PERIODIC
GMAX 0.5
&MULTIPOLE
EWALD_PRECISION 1.0E-6
RCUT 8.0
&END MULTIPOLE
&END PERIODIC
&QM_KIND C
MM_INDEX 2 5 8 11 15 18 20 23
&END QM_KIND
&QM_KIND N
MM_INDEX 7
&END QM_KIND
&QM_KIND O
MM_INDEX 6 13 21 22
&END QM_KIND
&QM_KIND H
MM_INDEX 1 3 4 9 10 12 14 16 17 19 24 25 26
&END QM_KIND
&END QMMM
&SUBSYS
&CELL
ABC 25.385 25.800 25.556
&END CELL
&TOPOLOGY
CONN_FILE_FORMAT PSF
COORD_FILE_FORMAT PDB
COORD_FILE_NAME model.pdb
CONN_FILE_NAME model.psf
# &DUMP_PSF
# FILENAME ./model.psf
# &END DUMP_PSF
&END TOPOLOGY
&KIND OO
ELEMENT O
&END KIND
&KIND C
BASIS_SET DZVP-GTH
POTENTIAL GTH-BLYP-q4
&END KIND
&KIND H
BASIS_SET DZVP-GTH
POTENTIAL GTH-BLYP-q1
&END KIND
&KIND O
BASIS_SET DZVP-GTH
POTENTIAL GTH-BLYP-q6
&END KIND
&KIND N
BASIS_SET DZVP-GTH
POTENTIAL GTH-BLYP-q5
&END KIND
&END SUBSYS
&PRINT
&PROGRAM_RUN_INFO
&EACH
MD 1
&END EACH
&END PROGRAM_RUN_INFO
&END PRINT
&END FORCE_EVAL
#&EXT_RESTART
# RESTART_FILE_NAME hyp_small.md.restart
# RESTART_DEFAULT F
# RESTART_POS T
#&END EXT_RESTART
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