problem generating basis set
Matthias Krack
matthia... at psi.ch
Sat Mar 21 15:44:08 UTC 2009
Hi Jörg,
indeed the missing < sign is a typo on my slides. Below you may find
an example for an input file, which should perform an optimization for
6 exponents (family basis set, ie. same exponents for s and p
orbitals) to facilitate your startup in the Gaussian basis set design
business. The output file qs.input contains the optimized exponents
and the corresponding coefficient for the occupied atomic orbitals in
a convenient format. This output file is not a direct input for CP2K/
QS, even if the name of the file might imply this. It's on you to
assemble (and test of course) a proper basis set based on this
information.
cheers,
Matthias
&ATOM
NAME F
RPRB 2.721
PPOT
OPTI 1.0D-8
ZVAL 9
ZEFF 7
LMAX 1
OCCU
1 2
1 5
MIXI 0.2
CONV 1.0D-14
ITER 200
IPPN 100
XCFN PADE
&END
&BASIS
GAUS
6
15.4309642052 6.5711763684 2.6219969372
1.0693496460
0.4217042136 0.1640150222
1 2 3 4 5 6
6
15.4309642052 6.5711763684 2.6219969372
1.0693496460
0.4217042136 0.1640150222
1 2 3 4 5 6
&END
&POTENTIAL
GOEDECKER
2 LMAX
.218524651 RC
2 -21.307361120 3.072869420 #C C1 C2
.195567211 1 23.584942110 H(s) 11
.174268317 0 H(p) no projector
&END
On Mar 21, 3:09 pm, Jörg Saßmannshausen
<jorg.sassm... at strath.ac.uk> wrote:
> Hi Marius,
>
> thanks for the info, now it is working. I simply sticked to the slides (and
> the redirect sign did not occure to me). Silly me.
>
> It is working now, I will search the list for further informations! :-)
>
> Have a nice weekend!
>
> Jörg
>
> On Samstag 21 März 2009 Marius Retegan wrote:
>
>
>
> > Hi,
>
> > Try adding the redirect sign... like this:
> > ./optbas < basis-F-q7-g4
> > Also, those inputs don't optimize neither alpha nor the coefficients.
> > Search the list, there was someone who explained a little the input.
> > Basically you should add OPTI 1.0D-7.
>
> > Marius
>
> > On Sat, Mar 21, 2009 at 12:59 AM, Jörg Saßmannshausen
> > <jorg.sassm... at strath.ac.uk<mailto:jorg.sassm... at strath.ac.uk
> >>> wrote:
>
> > Dear all,
>
> > I have a problem generating the basis set for F and the PBE functional.
> > Following Matthias' talk at the Tutorial, I did (in the cp2k directory):
>
> > - cvs co basis_sets
> > - cd basis_sets/source
>
> > I then had a look at the Makefile, change the path to blas etc. I was using
> > the g95-32 compiler to compile optbas. The compilation worked without any
> > problems.
>
> > I then was looking in the inpout folder for a suitable script for F and I
> > found the basis-F-q7-g4 one.
> > Just to make sure I am not messing up things, I copied basis-F-q7-g4 and
> > optbas in a different folder. Trying to follow the tutorial, I did
>
> > ./optbas basis-F-q7-g4
>
> > which basically stopped here:
>
> > PROGRAM ATOM
> > reading input file...
>
> > end of story, nothing happend. So I decided to try the Intel Fortran
> > Compiler, recompiled, and now I get:
>
> > PROGRAM ATOM
> > ------------
> > reading input file...
> > forrtl: Illegal seek
> > forrtl: severe (20): REWIND error, unit 5, file /dev/pts/2
> > Image PC Routine Line Source
> > optbas 000000000057B832 Unknown Unknown Unknown
> > optbas 000000000057A7C4 Unknown Unknown Unknown
> > optbas 000000000052F6BA Unknown Unknown Unknown
> > optbas 00000000004FC743 Unknown Unknown Unknown
> > optbas 00000000004FC030 Unknown Unknown Unknown
> > optbas 000000000050FE96 Unknown Unknown Unknown
> > optbas 000000000041667D Unknown Unknown Unknown
> > optbas 0000000000427B9B Unknown Unknown Unknown
> > optbas 000000000040D2FC Unknown Unknown Unknown
> > optbas 00000000004062A2 Unknown Unknown Unknown
> > libc.so.6 00002ADF44335154 Unknown Unknown Unknown
> > optbas 00000000004061E9 Unknown Unknown Unknown
>
> > Changing the optimisation level from -O3 to -O2 did not help. The compiler
> > version is 10.1 20081024, the same compiler which successfully builds cp2k.
>
> > Ok, and this is where I am stuck. Is there a human input error or is there
> > some other problem. I tried google, but other than Matthias' talk did not
> > produced something usefull.
>
> > Could somebody just give me a quick help and point me in the right
> > direction?
>
> > Many thanks.
>
> > All the best from Glasgow
>
> > Jörg
>
> > --
> > *************************************************************
> > Jörg Saßmannshausen
> > Research Fellow
> > University of Strathclyde
> > Department of Pure and Applied Chemistry
> > 295 Cathedral St.
> > Glasgow
> > G1 1XL
>
> > email:
> > jorg.sassm... at strath.ac.uk<mailto:jorg.sassm... at strath.ac.uk>
> > web:http://sassy.formativ.net
>
> > Please avoid sending me Word or PowerPoint attachments.
> > Seehttp://www.gnu.org/philosophy/no-word-attachments.html
>
> --
> *************************************************************
> Jörg Saßmannshausen
> Research Fellow
> University of Strathclyde
> Department of Pure and Applied Chemistry
> 295 Cathedral St.
> Glasgow
> G1 1XL
>
> email: jorg.sassm... at strath.ac.uk
> web:http://sassy.formativ.net
>
> Please avoid sending me Word or PowerPoint attachments.
> Seehttp://www.gnu.org/philosophy/no-word-attachments.html
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