segmentation fault on a water example
Marius Retegan
marius.s... at gmail.com
Mon Mar 9 16:48:27 UTC 2009
Hello,
I'm having some trouble running the cp2k/tests/QMMM/SE/regtest/water_3.inp test.
With a version compiled this afternoon from CVS i get the following
output (I posted only the beginning and the error message)
==============================================================
mretegan at fougeron has created process number 0 27382
**** **** ****** ** PROGRAM STARTED AT Mon Mar 9 17:41:14 2009
***** ** *** *** ** PROGRAM STARTED ON fougeron
** **** ****** PROGRAM STARTED BY mretegan
***** ** ** ** ** PROGRAM PROCESS ID 27382
**** ** ******* ** PROGRAM STARTED IN /fougeron/home/mretegan/software/cp2k
/tests/QMMM/SE/regtest
CP2K| version string: CP2K version 2.0.1 (Development Version)
CP2K| is freely available from http://cp2k.berlios.de/
CP2K| Program compiled at Mon Mar 9 15:25:57 CET 2009
CP2K| Program compiled on fougeron
CP2K| Program compiled for Linux-ia64-intel
CP2K| Last CVS entry /lib//
CP2K| Input file name water_3.inp
.
.
.
********************** begin of velocity initialization ***********************
Initial Temperature 298.00 K
COM velocity: 0.000000000000 0.000000000000 0.000000000000
*********************** end of velocity initialization ************************
Translating the system in order to center the QM fragment in the QM box.
QMMM| Information on the QM/MM Electrostatic Potential:
DISTRIBUTION OF THE NEIGHBOR LISTS
Total number of particle pairs: 6
Total number of matrix elements: 27
Average number of particle pairs: 6
Maximum number of particle pairs: 6
Average number of matrix element: 27
Maximum number of matrix elements: 27
DISTRIBUTION OF THE OVERLAP
Number of non-zero blocks: 6
Percentage non-zero blocks: 100.00
Average number of blocks per CPU: 6
Maximum number of blocks per CPU: 6
Average number of matrix elements per CPU: 27
Maximum number of matrix elements per CPU: 27
QMMM| No QM/MM Electrostatic coupling. Just Mechanical Coupling!
forrtl: severe (174): SIGSEGV, segmentation fault occurred
Image PC Routine Line Source
cp2k.sopt 400000000268CF50 Unknown Unknown Unknown
cp2k.sopt 4000000002687C50 Unknown Unknown Unknown
cp2k.sopt 40000000000B7BF0 Unknown Unknown Unknown
cp2k.sopt 4000000000065F50 Unknown Unknown Unknown
cp2k.sopt 40000000005A1CC0 Unknown Unknown Unknown
cp2k.sopt 400000000059F980 Unknown Unknown Unknown
cp2k.sopt 40000000021EB680 Unknown Unknown Unknown
cp2k.sopt 4000000001890170 Unknown Unknown Unknown
cp2k.sopt 400000000010C3C0 Unknown Unknown Unknown
cp2k.sopt 40000000000FD220 Unknown Unknown Unknown
cp2k.sopt 400000000010BCE0 Unknown Unknown Unknown
cp2k.sopt 4000000000401B40 Unknown Unknown Unknown
cp2k.sopt 4000000000400220 Unknown Unknown Unknown
cp2k.sopt 400000000000FD70 Unknown Unknown Unknown
cp2k.sopt 400000000000D390 Unknown Unknown Unknown
cp2k.sopt 4000000000008200 Unknown Unknown Unknown
cp2k.sopt 40000000000072C0 Unknown Unknown Unknown
libc.so.6.1 2000000000555C50 Unknown Unknown Unknown
cp2k.sopt 4000000000007000 Unknown Unknown Unknown
==============================================================
My first guess was that the program was miscompiled, and I've tried an
older version compiled also from CVS on the 4 Feb 2009.
==============================================================
mretegan at fougeron has created process number 0 27441
**** **** ****** ** PROGRAM STARTED AT Mon Mar 9 17:47:02 2009
***** ** *** *** ** PROGRAM STARTED ON fougeron
** **** ****** PROGRAM STARTED BY mretegan
***** ** ** ** ** PROGRAM PROCESS ID 27441
**** ** ******* ** PROGRAM STARTED IN /fougeron/home/mretegan/software/cp2k
/tests/QMMM/SE/regtest
CP2K| version string: CP2K version 2.0.1 (Development Version)
CP2K| is freely available from http://cp2k.berlios.de/
CP2K| Program compiled at Mon Mar 9 17:07:32 CET 2009
CP2K| Program compiled on fougeron
CP2K| Program compiled for Linux-ia64-intel
CP2K| Last CVS entry xray_diffraction.F/1.25/Wed Feb 4 08:44:19 2009
CP2K| Input file name water_3.inp
==============================================================
The same flags where used to compile both versions.
Does anybody have an idea on how to solve this?
Thanks,
Marius
More information about the CP2K-user
mailing list