[CP2K:2105] Inconsistency in molecular dipole calculation
Teodoro Laino
teodor... at gmail.com
Fri Jun 5 07:33:38 UTC 2009
Ciao Daniele
Thanks for the bug report. It was a known problem with molecular dipoles
that
just for laziness was never fixed.
It is now in the CVS (actually.. it will be in 10 minutes in the CVS).
Teo
Daniele Passerone wrote:
> Dear cp2k developers,
>
> We found some inconsistencies while trying to compute the dipole
> moments of a set of rather large molecules (about 50 atoms each). We
> perform localization then compute the molecular dipoles, all in the
> periodic framework of qs.
>
> The problem already starts with a single molecule: when reducing the
> unit cell, at a certain point the result contained in the
> MOLECULAR_DIPOLES file and the one in TOTAL_DIPOLE dramatically
> diverge in one of the components, the former making no sense anymore:
>
> molecule dimensions: about 11.5 X 10 x 5 [Ang]
>
> cell: 24 x 11.7 x 30 : Energy -210.480436477626597
> tot. dipole (debye):
> 0.103426 0.309235 1.012335
> mol. dipole (debye):
> 0.103426 0.309235 1.012335
>
>
>
> cell: 23 x 11.7 x 30 : Energy: -210.480579307746098
> tot. dipole (debye)
> 0.1028177 0.308785 1.010828
> mol. dipole (debye):
> -331.318277 0.308785 1.010828
>
>
> As you see, as the x dimension of the cell hits twice the size x of
> the molecule, then the mol. dipole gets wrong. Curiosly, in the y
> direction the cell dimensions are comparable with the molecular size,
> but I observe no problem!
>
> I tried different localization algorithms, and I include the input
> file (the run takes 4 minutes on 16 cpus, with SZV basis sets).
>
> Thank you for any help,
> Daniele
>
>
> -----------------------------------------------------------------------------------------------------------------------------------
>
> &FORCE_EVAL
> METHOD Quickstep
> &DFT
> BASIS_SET_FILE_NAME ./BASIS_MOLOPT
> POTENTIAL_FILE_NAME ./GTH_POTENTIALS
> RESTART_FILE_NAME RESTART.wfn
> &QS
> METHOD GPW
> EXTRAPOLATION ASPC
> EXTRAPOLATION_ORDER 3
> &END QS
> &SCF
> MAX_SCF 20
> SCF_GUESS RESTART
> EPS_SCF 1.0E-6
> &OT
> PRECONDITIONER FULL_SINGLE_INVERSE
> MINIMIZER DIIS
> &END
> &OUTER_SCF
> MAX_SCF 20
> EPS_SCF 1.0E-6
> &END
> &END SCF
> &XC
> &XC_FUNCTIONAL PBE
> &END XC_FUNCTIONAL
> &END XC
> &LOCALIZE
> EPS_LOCALIZATION 0.00001
> METHOD CRAZY
> &END
> &PRINT
> &LOCALIZATION
> &MOLECULAR_DIPOLES
> ADD_LAST NUMERIC
> &EACH
> QS_SCF 1
> &END
> FILENAME ./mol_dip
> &END
> &TOTAL_DIPOLE
> FILENAME ./tot_dip
> &END
> &END
> &END
> &END DFT
> &SUBSYS
> &CELL
> ABC [angstrom] 23 11.7 30
> &END CELL
> &COORD
> N 6.280 9.939 18.195 MOL1
> N 17.807 6.665 20.913 MOL1
> C 8.726 9.186 18.612 MOL1
> C 9.778 10.173 18.679 MOL1
> C 9.473 11.557 18.546 MOL1
> C 10.479 12.485 18.545 MOL1
> C 11.817 12.11 18.846 MOL1
> C 12.855 13.086 18.805 MOL1
> C 14.155 12.723 19.024 MOL1
> C 14.466 11.417 19.502 MOL1
> C 15.820 11.026 19.707 MOL1
> C 16.125 9.767 20.151 MOL1
> C 15.091 8.909 20.626 MOL1
> C 15.401 7.605 21.163 MOL1
> C 14.420 6.826 21.738 MOL1
> C 13.106 7.333 21.914 MOL1
> C 12.146 6.595 22.651 MOL1
> C 10.900 7.128 22.922 MOL1
> C 10.596 8.436 22.491 MOL1
> C 11.507 9.162 21.743 MOL1
> C 12.763 8.619 21.384 MOL1
> C 13.736 9.336 20.584 MOL1
> C 13.416 10.486 19.766 MOL1
> C 12.120 10.753 19.172 MOL1
> C 11.125 9.749 18.861 MOL1
> C 11.423 8.341 18.668 MOL1
> C 12.711 7.85 18.347 MOL1
> C 12.955 6.492 18.228 MOL1
> C 11.919 5.554 18.420 MOL1
> C 10.632 6.002 18.638 MOL1
> C 10.353 7.39 18.718 MOL1
> C 9.008 7.843 18.729 MOL1
> C 7.377 9.598 18.401 MOL1
> C 16.728 7.091 21.044 MOL1
> H 9.639 8.885 22.753 MOL1
> H 12.594 14.109 18.531 MOL1
> H 10.170 6.556 23.495 MOL1
> H 11.257 10.175 21.438 MOL1
> H 17.160 9.429 20.211 MOL1
> H 16.610 11.736 19.456 MOL1
> H 10.267 13.535 18.340 MOL1
> H 13.521 8.552 18.171 MOL1
> H 12.127 4.486 18.348 MOL1
> H 12.422 5.608 23.024 MOL1
> H 9.800 5.3 18.710 MOL1
> H 14.971 13.431 18.879 MOL1
> H 8.199 7.112 18.734 MOL1
> H 14.662 5.83 22.108 MOL1
> H 13.958 6.15 17.975 MOL1
> H 8.437 11.856 18.386 MOL1
> &END
> &TOPOLOGY
> COORD_FILE_FORMAT OFF
> &END
> &KIND C
> BASIS_SET SZV-MOLOPT-GTH
> POTENTIAL GTH-PBE-q4
> &END KIND
> &KIND N
> BASIS_SET SZV-MOLOPT-GTH
> POTENTIAL GTH-PBE-q5
> &END KIND
> &KIND O
> BASIS_SET SZV-MOLOPT-GTH
> POTENTIAL GTH-PBE-q6
> &END KIND
> &KIND H
> BASIS_SET SZV-MOLOPT-GTH
> POTENTIAL GTH-PBE-q1
> &END KIND
> &END SUBSYS
> &END FORCE_EVAL
> &GLOBAL
> PRINT_LEVEL LOW
> PROJECT LOC
> RUN_TYPE ENERGY
> &END GLOBAL
>
>
> >
>
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