ERRORL2 in cp_fm_types:cp_fm_create processor
Axel
akoh... at gmail.com
Wed Jan 21 20:57:41 UTC 2009
On Jan 21, 10:57 am, carlo antonio pignedoli <c.pig... at gmail.com>
wrote:
> Dear Axel, I would exclude that I'm running out of memory:
>
> the job (with a cutoff of 200 istead of 240) uses ~1.1 GB per core on
> my cluster on 64 cores
> (this is what I get from "top" command on the nodes).
>
> On the XRAY-XT3 I use 512 cores with 1G per core, so I expect less
> that 1G per core.
please note, that in my experience memory consumption in cp2k
does _NOT_ reduce as much as you would expect from other (e.g.
pure plane wave) codes. it seems to level out pretty quickly.
cheers,
axel.
>
> How can I give you further details?
>
> Thanks a lot
>
> Carlo
>
> On Wed, Jan 21, 2009 at 1:08 AM, Axel <akoh... at gmail.com> wrote:
>
> > On Jan 20, 6:58 pm, "carlo antonio pignedoli" <c.pig... at gmail.com>
> > wrote:
> >> Dear all,
> >> I'm trying to do a geometry optimization on a large Au slab.
>
> >> On my linux cluster it works, slooooowly as obvious.
>
> >> If I try the same input on a CRAY-XT3 what I get is:
>
> >> *** 00:46:12 ERRORL2 in cp_fm_types:cp_fm_create processor 0 ***
> >> *** err=-300 condition FAILED at line 170 ***
>
> > my first guess would be that you are running out of memory.
>
> > there is no paging/swapping on xt3 compute nodes and if
> > you have a large system you may just run out of memory.
> > if this is a dual-core xt3, you may try using only one core.
>
> > cheers,
> > axel.
>
> >> *
>
> >> ===== Routine Calling Stack =====
>
> >> 10 make_preconditioner_single
> >> 9 init_scf_loop
> >> 8 scf_env_do_scf
> >> 7 qs_energies
> >> 6 qs_forces
> >> 5 cp_eval_at
> >> 4 cp_opt_gopt_step
> >> 3 geoopt_lbfgs
> >> 2 cp_geo_opt
> >> 1 CP2K
>
> >> I include the input for completeness.
>
> >> Do you have any suggestion?
>
> >> Thanks in advance
>
> >> Carlo
>
> >> &FORCE_EVAL
> >> METHOD Quickstep
> >> &DFT
> >> BASIS_SET_FILE_NAME ./BASIS_SET
> >> POTENTIAL_FILE_NAME ./GTH_POTENTIALS
> >> RESTART_FILE_NAME BIGAu-RESTART.wfn
> >> &QS
> >> METHOD GPW
> >> EXTRAPOLATION ASPC
> >> EXTRAPOLATION_ORDER 3
> >> &END QS
> >> &MGRID
> >> CUTOFF 240
> >> NGRIDS 5
> >> &END
> >> &SCF
> >> MAX_SCF 20
> >> SCF_GUESS ATOMIC
> >> EPS_SCF 1.0E-5
> >> &OT
> >> PRECONDITIONER FULL_SINGLE_INVERSE
> >> MINIMIZER CG
> >> &END
> >> &OUTER_SCF
> >> MAX_SCF 8
> >> EPS_SCF 1.0E-5
> >> &END
> >> &PRINT
> >> &RESTART
> >> &EACH
> >> GEO_OPT 2
> >> &END
> >> ADD_LAST NUMERIC
> >> FILENAME RESTART
> >> &END
> >> &RESTART_HISTORY OFF
> >> &END
> >> &END
> >> &END SCF
> >> &XC
> >> &XC_FUNCTIONAL PBE
> >> &END XC_FUNCTIONAL
> >> &END XC
> >> &END DFT
> >> &SUBSYS
> >> &CELL
> >> A [angstrom] 65.414448 0.000000 0.000000
> >> B [angstrom] 0.000000 39.483733 -2.427710
> >> C [angstrom] 0.000000 0.000000 28.0
> >> &END CELL
> >> &TOPOLOGY
> >> COORD_FILE_NAME ./bigau.xyz
> >> COORDINATE xyz
> >> &END
> >> &KIND Au
> >> BASIS_SET TZ-GTH
> >> POTENTIAL GTH-PBE-q11
> >> &END KIND
> >> &KIND H
> >> BASIS_SET DZVP-GTH-PBE
> >> POTENTIAL GTH-PBE-q1
> >> &END KIND
> >> &END SUBSYS
> >> &END FORCE_EVAL
> >> &GLOBAL
> >> PRINT_LEVEL LOW
> >> PROJECT BIGAu
> >> RUN_TYPE GEO_OPT
> >> WALLTIME 85000
> >> &END GLOBAL
> >> &MOTION
> >> &CONSTRAINT
> >> &FIXED_ATOMS
> >> LIST 1..330
> >> &END
> >> &END
> >> &GEO_OPT
> >> MAX_ITER 5000
> >> MAX_FORCE 0.00100
> >> OPTIMIZER LBFGS
> >> &BFGS
> >> &END
> >> &END
> >> &END
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