help me: compile undefined reference ...

Luca bellu... at unisi.it
Tue Dec 29 12:56:30 UTC 2009
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Hi Zhang,
you have an inconsistency in appending underscores to the fortran name
entities,
it seems to be only  for the scalapack library.
You may check your scalapack config file (SLmake.in):
#  (-DNoChange, -DAdd_, -DUpCase, or -Df77IsF2C)
CDEFS         =-DAdd_  $(USEMPI)
This problem may depend on the compiler options (in gnu compiler : -
fno-second-underscore,-fno-underscoring ).
Search for similar topics in the mailing list.
Luca

On Dec 28, 10:45 pm, netscape <yshzh... at gmail.com> wrote:
> Dear *,*
>
> I am trying to compile the latest CP2K on our linux cluster, Dual-Core
> AMD Opteron x86_64 GNU/Linux. Using Intel Fortran compiler ifort
> (version 10.1), the serial CP2K version was successfully installed
> using Linux-x86-64-intel.sopt. But when I come to the MPI parallel
> version, it has tortured me for several days, and no lucky at all. I
> first installed the mpich2, all binary files like mpicc and mpif90 are
> appeared. Under the help of scalapack_installer_0.96, I compiled BLAS,
> BLACS, lapack-3.2.1 and scalapck-1.8.0 by mpicc and mpif90 without any
> error. A ifort64_mp ACML was downloaded from  website.
>
> In my  Linux-x86-64-intel.popt file:
>
> CC       = /home/zhang/software/cp2k/intel/mpich2-ifort/bin/mpicc
> CPP      =
> FC       = /home/zhang/software/cp2k/intel/mpich2-ifort/bin/mpif90
> LD       = /home/zhang/software/cp2k/intel/mpich2-ifort/bin/mpif90
> AR       = ar -r
> DFLAGS   = -D__INTEL -D__FFTSG -D__parallel -D__BLACS -D__SCALAPACK -
> D__FFTW3
> CPPFLAGS =
> FCFLAGS  = $(DFLAGS) -I /home/zhang/software/cp2k/intel/include -I /
> home/zhang/software/cp2k/intel/acml4.3.0/ifort64_mp/include -mp -O3 -
> xW -heap-arrays 64 -funroll-loops -fpp -free
> FCFLAGS2 = $(DFLAGS) -I /home/zhang/software/cp2k/intel/include -I /
> home/zhang/software/cp2k/intel/acml4.3.0/ifort64_mp/include -mp -O1 -
> xW -heap-arrays 64 -fpp -free
> LDFLAGS  = $(FCFLAGS) -I /home/zhang/software/cp2k/intel/include -I /
> home/zhang/software/cp2k/intel/acml4.3.0/ifort64_mp/include
> LIBS     = /home/zhang/software/cp2k/intel/lib/lib/libscalapack.a \
>            /home/zhang/software/cp2k/intel/lib/lib/blacsF77.a \
>            /home/zhang/software/cp2k/intel/lib/lib/blacs.a \
>            /home/zhang/software/cp2k/intel/acml4.3.0/ifort64_mp/lib/
> libacml.a \
>            /home/zhang/software/cp2k/intel/acml4.3.0/ifort64_mp/lib/
> libacml_mv.a \
>            /home/zhang/software/cp2k/intel/lib/libfftw3.a
>
> OBJECTS_ARCHITECTURE = machine_intel.o
>
> graphcon.o: graphcon.F
>   $(FC) -c $(FCFLAGS2) $<
>
> With this script file, it generates lots of undefined reference error
> messages when it's trying to use libscapack.a. For example,
>
> /home/zhang/software/cp2k/intel/lib/lib/libscalapack.a
> (pdelget.o):pdelget.f:(.text+0x2cb): more undefined references to
> `lsame_'
> follow
> /home/zhang/software/cp2k/intel/lib/lib/libscalapack.a
> (PB_Cstypeset.o): In function `PB_Cstypeset':
> PB_Cstypeset.c:(.text+0x176): undefined reference to
> `saxpy_'
> PB_Cstypeset.c:(.text+0x181): undefined reference to
> `scopy_'
> PB_Cstypeset.c:(.text+0x18c): undefined reference to
> `sswap_'
> PB_Cstypeset.c:(.text+0x197): undefined reference to
> `sgemv_'
> PB_Cstypeset.c:(.text+0x1a2): undefined reference to
> `ssymv_'
> PB_Cstypeset.c:(.text+0x1ad): undefined reference to
> `ssymv_'
> PB_Cstypeset.c:(.text+0x1b8): undefined reference to
> `strmv_'
> PB_Cstypeset.c:(.text+0x1c3): undefined reference to
> `strsv_'
> PB_Cstypeset.c:(.text+0x1fa): undefined reference to
> `sger_'
> PB_Cstypeset.c:(.text+0x205): undefined reference to
> `sger_'
> PB_Cstypeset.c:(.text+0x210): undefined reference to
> `ssyr_'
> PB_Cstypeset.c:(.text+0x21b): undefined reference to
> `ssyr_'
> PB_Cstypeset.c:(.text+0x226): undefined reference to
> `ssyr2_'
> PB_Cstypeset.c:(.text+0x231): undefined reference to
> `ssyr2_'
> PB_Cstypeset.c:(.text+0x23c): undefined reference to
> `sgemm_'
> PB_Cstypeset.c:(.text+0x247): undefined reference to
> `ssymm_'
> PB_Cstypeset.c:(.text+0x252): undefined reference to
> `ssymm_'
> PB_Cstypeset.c:(.text+0x25d): undefined reference to
> `ssyrk_'
> PB_Cstypeset.c:(.text+0x268): undefined reference to
> `ssyrk_'
> PB_Cstypeset.c:(.text+0x273): undefined reference to
> `ssyr2k_'
> PB_Cstypeset.c:(.text+0x27e): undefined reference to
> `ssyr2k_'
> PB_Cstypeset.c:(.text+0x289): undefined reference to
> `strmm_'
> PB_Cstypeset.c:(.text+0x294): undefined reference to
> `strsm_'
> /home/zhang/software/cp2k/intel/lib/lib/libscalapack.a(pbdtran.o): In
> function `pbdtran_':
> pbdtran.f:(.text+0xc0): undefined reference to
> `lsame_'
> pbdtran.f:(.text+0xe5): undefined reference to
> `lsame_'
> /home/zhang/software/cp2k/intel/lib/lib/libscalapack.a(pbdtran.o): In
> function `pbdtr2af_':
> pbdtran.f:(.text+0x1f86): undefined reference to
> `lsame_'
> /home/zhang/software/cp2k/intel/lib/lib/libscalapack.a(pbdtran.o): In
> function `pbdtr2bt_':
> pbdtran.f:(.text+0x22d8): undefined reference to
> `lsame_'
> /home/zhang/software/cp2k/intel/lib/lib/libscalapack.a(pbdtran.o): In
> function `pbdtr2at_':
> pbdtran.f:(.text+0x25f9): undefined reference to
> `lsame_'
> /home/zhang/software/cp2k/intel/lib/lib/libscalapack.a
> (pbdmatadd.o):pbdmatadd.f:(.text+0xd9): more undefined references to
> `lsame_'
> follow
> /home/zhang/software/cp2k/intel/lib/lib/libscalapack.a(pbdmatadd.o):
> In function `pbdmatadd_':
> pbdmatadd.f:(.text+0x34f1): undefined reference to
> `daxpy_'
> pbdmatadd.f:(.text+0x351c): undefined reference to
> `lsame_'
> pbdmatadd.f:(.text+0x358d): undefined reference to
> `daxpy_'
> pbdmatadd.f:(.text+0x3d13): undefined reference to
> `dcopy_'
> pbdmatadd.f:(.text+0x3d3e): undefined reference to
> `lsame_'
> pbdmatadd.f:(.text+0x3da3): undefined reference to
> `dcopy_'
> pbdmatadd.f:(.text+0x4045): undefined reference to
> `dscal_'
> pbdmatadd.f:(.text+0x4070): undefined reference to
> `lsame_'
> pbdmatadd.f:(.text+0x40bb): undefined reference to
> `dscal_'
> /home/zhang/software/cp2k/intel/lib/lib/libscalapack.a(pbdtrsrt.o): In
> function `pbdtrsrt_':
> pbdtrsrt.f:(.text+0x62): undefined reference to
> `lsame_'
> /home/zhang/software/cp2k/intel/lib/lib/libscalapack.a(pbdtrget.o): In
> function `pbdtrget_':
> pbdtrget.f:(.text+0x49): undefined reference to
> `lsame_'
> pbdtrget.f:(.text+0x28f): undefined reference to
> `lsame_'
> /home/zhang/software/cp2k/intel/lib/lib/libscalapack.a
> (PB_Cdtypeset.o): In function `PB_Cdtypeset':
> PB_Cdtypeset.c:(.text+0x185): undefined reference to
> `daxpy_'
> PB_Cdtypeset.c:(.text+0x190): undefined reference to
> `dcopy_'
> PB_Cdtypeset.c:(.text+0x19b): undefined reference to
> `dswap_'
> PB_Cdtypeset.c:(.text+0x1a6): undefined reference to
> `dgemv_'
> PB_Cdtypeset.c:(.text+0x1b1): undefined reference to
> `dsymv_'
> PB_Cdtypeset.c:(.text+0x1bc): undefined reference to
> `dsymv_'
> PB_Cdtypeset.c:(.text+0x1c7): undefined reference to
> `dtrmv_'
> PB_Cdtypeset.c:(.text+0x1d2): undefined reference to
> `dtrsv_'
> PB_Cdtypeset.c:(.text+0x209): undefined reference to
> `dger_'
> PB_Cdtypeset.c:(.text+0x214): undefined reference to
> `dger_'
> PB_Cdtypeset.c:(.text+0x21f): undefined reference to
> `dsyr_'
> PB_Cdtypeset.c:(.text+0x22a): undefined reference to
> `dsyr_'
> PB_Cdtypeset.c:(.text+0x235): undefined reference to
> `dsyr2_'
> PB_Cdtypeset.c:(.text+0x240): undefined reference to
> `dsyr2_'
> PB_Cdtypeset.c:(.text+0x24b): undefined reference to
> `dgemm_'
> PB_Cdtypeset.c:(.text+0x256): undefined reference to
> `dsymm_'
> PB_Cdtypeset.c:(.text+0x261): undefined reference to
> `dsymm_'
> PB_Cdtypeset.c:(.text+0x26c): undefined reference to
> `dsyrk_'
> PB_Cdtypeset.c:(.text+0x277): undefined reference to
> `dsyrk_'
> PB_Cdtypeset.c:(.text+0x282): undefined reference to
> `dsyr2k_'
> PB_Cdtypeset.c:(.text+0x28d): undefined reference to
> `dsyr2k_'
> PB_Cdtypeset.c:(.text+0x298): undefined reference to
> `dtrmm_'
> PB_Cdtypeset.c:(.text+0x2a3): undefined reference to
> `dtrsm_'
> /home/zhang/software/cp2k/intel/lib/lib/libscalapack.a(pdswap_.o): In
> function `pdswap_':
> pdswap_.c:(.text+0x1505): undefined reference to
> `dcopy_'
> pdswap_.c:(.text+0x1ab2): undefined reference to
> `dswap_'
> pdswap_.c:(.text+0x1d68): undefined reference to
> `dcopy_'
> pdswap_.c:(.text+0x23b3): undefined reference to
> `dswap_'
> /home/zhang/software/cp2k/intel/lib/lib/libscalapack.a(pbztrnv.o): In
> function `pbztrnv_':
> pbztrnv.f:(.text+0x6d): undefined reference to
> `lsame_'
> pbztrnv.f:(.text+0x8d): undefined reference to
> `lsame_'
> /home/zhang/software/cp2k/intel/lib/lib/libscalapack.a(pbzvecadd.o):
> In function `pbzvecadd_':
> pbzvecadd.f:(.text+0x191): undefined reference to
> `lsame_'
> pbzvecadd.f:(.text+0x31c): undefined reference to
> `lsame_'
> pbzvecadd.f:(.text+0x730): undefined reference to
> `lsame_'
> /home/zhang/software/cp2k/intel/lib/lib/libscalapack.a
> (pbzvecadd.o):pbzvecadd.f:(.text+0xabb): more undefined references to
> `lsame_'
> follow
> /home/zhang/software/cp2k/intel/lib/lib/libscalapack.a(pbzvecadd.o):
> In function `pbzvecadd_':
> pbzvecadd.f:(.text+0x138f): undefined reference to
> `zcopy_'
> pbzvecadd.f:(.text+0x1909): undefined reference to
> `zaxpy_'
> pbzvecadd.f:(.text+0x1bd7): undefined reference to
> `zscal_'
> /home/zhang/software/cp2k/intel/lib/lib/libscalapack.a(pbztrst1.o): In
> function `pbztrst1_':
> pbztrst1.f:(.text+0x51): undefined reference to
> `lsame_'
> /home/zhang/software/cp2k/intel/lib/lib/libscalapack.a
> (PB_Cztypeset.o): In function `PB_Cztypeset':
> PB_Cztypeset.c:(.text+0x198): undefined reference to
> `zaxpy_'
> PB_Cztypeset.c:(.text+0x1a3): undefined reference to
> `zcopy_'
> PB_Cztypeset.c:(.text+0x1ae): undefined reference to
> `zswap_'
> PB_Cztypeset.c:(.text+0x1b9): undefined reference to
> `zgemv_'
> PB_Cztypeset.c:(.text+0x1cf): undefined reference to
> `zhemv_'
> PB_Cztypeset.c:(.text+0x1da): undefined reference to
> `ztrmv_'
> PB_Cztypeset.c:(.text+0x1e5): undefined reference to
> `ztrsv_'
> PB_Cztypeset.c:(.text+0x21c): undefined reference to
> `zgerc_'
> PB_Cztypeset.c:(.text+0x227): undefined reference to
> `zgeru_'
> PB_Cztypeset.c:(.text+0x23d): undefined reference to
> `zher_'
> PB_Cztypeset.c:(.text+0x253): undefined reference to
> `zher2_'
> PB_Cztypeset.c:(.text+0x25e): undefined reference to
> `zgemm_'
> PB_Cztypeset.c:(.text+0x269): undefined reference to
> `zsymm_'
> PB_Cztypeset.c:(.text+0x274): undefined reference to
> `zhemm_'
> PB_Cztypeset.c:(.text+0x27f): undefined reference to
> `zsyrk_'
> PB_Cztypeset.c:(.text+0x28a): undefined reference to
> `zherk_'
> PB_Cztypeset.c:(.text+0x295): undefined reference to
> `zsyr2k_'
> PB_Cztypeset.c:(.text+0x2a0): undefined reference to
> `zher2k_'
> PB_Cztypeset.c:(.text+0x2ab): undefined reference to
> `ztrmm_'
> PB_Cztypeset.c:(.text+0x2b6): undefined reference to
> `ztrsm_'
> /home/zhang/software/cp2k/intel/lib/lib/libscalapack.a(pzswap_.o): In
> function `pzswap_':
> pzswap_.c:(.text+0x1505): undefined reference to
> `zcopy_'
> pzswap_.c:(.text+0x1ab2): undefined reference to
> `zswap_' ...
>
> read more »
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