repeated output entries
sersunzo
Pitago... at gmail.com
Mon Nov 17 10:23:05 UTC 2008
Dear all,
I’m a new user to CP2K. I’m trying to run some exercises repeating
some cases proposed at a tutorial I attended in Lyon this May.
When I run a MD simulation on a AMD-Opteron (2.2 GHz) cluster I
noticed that the text in output files is repeated according to the
number of processor I used.
For instance, the .ener file with 1 processor is
Step Time[fs] Kin.[a.u.] … UsedTime[s]
0 0 0.012825602 … 0
1 0.5 0.012483648 … 15.3102
2 1 0.011524168 … 6.7489
with 2 processors
Step Time[fs] Kin.[a.u.] … UsedTime[s]
0 0 0.012825602 … 0
1 0.5 0.012483669 … 26.1512
1 0.5 0.012483669 … 26.3826
2 1 0.011524142 … 6.7792
2 1 0.011524142 … 6.7637
…etc.
with four
Step Time[fs] Kin.[a.u.] … UsedTime[s]
0 0 0.012825602 … 0
1 0.5 0.012483669 … 52.7459
1 0.5 0.012483669 … 53.7512
1 0.5 0.012483669 … 57.6845
1 0.5 0.012483669 … 57.689
2 1 0.011524142 … 13.4656
2 1 0.011524142 … 14.3997
2 1 0.011524142 … 13.8007
2 1 0.011524142 … 14.1252
3 1.5 0.010195152 … 17.2202
3 1.5 0.010195152 … 17.6331
3 1.5 0.010195152 … 17.1964
3 1.5 0.010195152 … 17.4447
4 2 0.008830685 … 13.4772
4 2 0.008830685 … 14.5027
4 2 0.008830685 … 14.0316
4 2 0.008830685 … 13.9997
…etc.
It looks like each processor is working by its own and the calculation
time increases with the number of processors. I supposed there is a
compilation issue (arch=Linux-x86-64-intel). I just wondering if
somebody else had this problem before.
Thank in advance
Alessio
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