[CP2K:1249] Installing problems

Krzysztof Sakrejda-Leavitt krzysztof... at gmail.com
Sat Jul 26 14:05:44 CEST 2008


sersunzo wrote:
> Hi everybody,
>
> I downloaded cpk2 and I try to install it on both our cluster computer
> and my pc. I'm less then a newbie in linux and, of course, I couldn't
> manage to install neither of the two. I hope my questions are not too
> silly.
> In case of my pc (OS ubuntu 8.04) the problem starts immediately. If I
> run the script get_arch_code I get the following error message:
>
> ./get_arch_code: 98: [[: not found
>
> ./get_arch_code: 98: [[: not found
>   

This one's easy: Ubuntu uses "dash" as the default shell and the "[[" 
construct that the script calls is specific to the "bash" shell.  That's 
the source of the error.  Ubuntu does have the bash shell installed, but 
it is not linked to from /bin/sh ... which is what most scripts use to 
invoke a shell.  Check with the Ubuntu forums/FAQ's how to set the 
default shell to bash or.... sometimes you can just run the scripts with 
SHELL=/bin/bash and all will be well unless /bin/sh is hardcoded into 
the scripts... you could also temporarily change the link for your 
system... but someone who knows the code better will have to tell you 
which workaround is best...

No idea about the other question.

Krzysztof
> ./get_arch_code: 98: [[: not found
>
> ./get_arch_code: 98: [[: not found
>
> Linux-i686
>
>
> In the cluster, at least it start to do something after  make
> ARCH=Linux-x86-64-pgi VERSION=sopt
> but than I got the following error message:
>
> pgf90-Fatal-/share/apps/pgi/linux86-64/6.1/bin/pgf901 TERMINATED by
> signal 11
>
> Arguments to /share/apps/pgi/linux86-64/6.1/bin/pgf901
>
> /share/apps/pgi/linux86-64/6.1/bin/pgf901 qs_scf_post.f90 -opt 2 -
> terse 1 -inform warn -nohpf -nostatic -x 19 0x400000 -quad -x 59 4 -x
> 59 4 -x 15 2 -x 49 0x400004 -x 51 0x20 -x 57 0x4c -x 58 0x10000 -x 124
> 0x1000 -x 57 0xfb0000 -x 58 0x78031040 -x 70 0x6c00 -x 47 0x400000 -x
> 48 4608 -x 49 0x100 -x 120 0x200 -stdinc /share/apps/pgi/
> linux86-64/6.1/include:/usr/local/include:/usr/lib/gcc/x86_64-redhat-
> linux/3.4.6/include:/usr/lib/gcc/x86_64-redhat-linux/3.4.6//include:/
> usr/include -def unix -def __unix -def __unix__ -def linux -def
> __linux -def __linux__ -def __inline__= -def __NO_INLINE__ -def
> __NO_MATH_INLINES -def __x86_64__ -def
> __LONG_MAX__=9223372036854775807L -def '__SIZE_TYPE__=unsigned long
> int' -def '__PTRDIFF_TYPE__=long int' -def __THROW= -def __amd64__ -
> freeform -vect 48 -freeform -quad -x 119 0x10000000 -output /tmp/
> pgf90aaaaappgaw.ilm
>
> make[1]: *** [qs_scf_post.o] Error 127
>
> make[1]: *** Waiting for unfinished jobs....
>
> make: *** [build] Error 2
>
> Here is the Linux-x86-64-pgi.sopt file
>
> CC       = cc
>
> CPP      = cpp
>
> FC       = pgf90 -Mfree
>
> LD       = pgf90
>
> AR       = ar -r
>
> DFLAGS   = -D__PGI -D__FFTSG\
>
>            -D__FFTW2
>
> CPPFLAGS = -traditional -C $(DFLAGS) -P
>
> FCFLAGS  = -fastsse -tp amd64
>
> LDFLAGS  = $(FCFLAGS)
>
> LIBS     = -lacml -ldfftw
>
>
>
> OBJECTS_ARCHITECTURE = machine_pgi.o
>
> Probably I'm doing or missing something very stupid, but I couldn't
> really find any piece of information can help to understanding these
> things (any suggestions?). The easiest solution would be waiting for
> the cluster administrator
> to be back form vacation, but maybe in this way I can learn something.
> I don't know if it happens only here, but the administrators sometimes
> like to solve your problems without explaining to you how they did ;-)
>
> Tia
>
> Alessio
>
> >
>
>   



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