Unknown FFT library: FFTW3

YSun yud... at nag.co.uk
Thu Jul 10 16:29:47 CEST 2008


The compilation seems done with pgi 6.2.5, an older acml, and an older
xt-libsci. Then, I launch the cp2k with H2O.inc. Now the job failed
due to an unknown file. Where is this POTENTIAL?

WARNING : FFT library FFTW3 is not available  Trying FFTSG as a
default

CP2K: The specified file POTENTIAL can not be opened, it does not
exist.
    1
[NID 15638]Apid 202131: initiated application termination
Application 202131 exit signals: Killed


Thanks,

Yudong

On Jul 10, 2:54 pm, Axel <akoh... at gmail.com> wrote:
> obviously, you have a pgi7.1 compiled ACML.
> get an older one.
>
> cheers,
>    axel.
>
> On Jul 10, 9:47 am, YSun <yud... at nag.co.uk> wrote:
>
>
>
> > Hi Teo,
>
> > I use this makefile with pgi 6.2.5 to compile.
>
> > CC       = cc
> > CPP      = cpp
> > FC       = ftn -Mfree
> > LD       = ftn
> > AR       = ar -r
> > DFLAGS   = -D__PGI -D__FFTSG \
> >            -D__parallel -D__BLACS -D__SCALAPACK
> > CPPFLAGS = -traditional -C $(DFLAGS) -P
> > FCFLAGS  = -fastsse -tp amd64
> > LDFLAGS  = $(FCFLAGS)
> > LIBS     = -lacml -lsci
>
> > OBJECTS_ARCHITECTURE = machine_pgi.o
>
> > It turns out lots of undefined reference errors in acml and libsci.
> > What else should I include into the makefile?
>
> > Thanks,
>
> > Yudong
>
> > /opt/acml/4.0.1a/pgi64/lib/libacml.a(daxpy.o)(.text+0x6c1): In
> > function `daxpy_':
> > : undefined reference to `__pgi_unified_version_selector71'
> > /opt/acml/4.0.1a/pgi64/lib/libacml.a(dcopy.o)(.text+0x631): In
> > function `dcopy_':
> > : undefined reference to `__pgi_unified_version_selector71'
> > /opt/acml/4.0.1a/pgi64/lib/libacml.a(ddot.o)(.text+0x5c1): In function
> > `ddot_':
> > : undefined reference to `__pgi_unified_version_selector71'
> > /opt/acml/4.0.1a/pgi64/lib/libacml.a(dgecon.o)(.text+0xbe1): In
> > function `dgecon_':
> > : undefined reference to `__pgi_unified_version_selector71'
> > /opt/acml/4.0.1a/pgi64/lib/libacml.a(dgemm.o)(.text+0x1601): In
> > function `dgemm_':
> > : undefined reference to `__pgi_unified_version_selector71'
> > /opt/acml/4.0.1a/pgi64/lib/libacml.a(dgemmwrapL.o)(.text+0xeb1): more
> > undefined references to `__pgi_unified_version_selector71' follow
> > /opt/xt-libsci/10.2.1/pgi/snos64/lib/libsci.a(irt_lu_real_parallel.o)
> > (.text+0x95b): In function `irt_lu_real_parallel_refine_':
> > : undefined reference to `pgf90_auto_alloc'
> > /opt/xt-libsci/10.2.1/pgi/snos64/lib/libsci.a(irt_lu_real_parallel.o)
> > (.text+0x971): In function `irt_lu_real_parallel_refine_':
> > : undefined reference to `pgf90_auto_alloc'
> > /opt/xt-libsci/10.2.1/pgi/snos64/lib/libsci.a(irt_lu_real_parallel.o)
> > (.text+0x988): In function `irt_lu_real_parallel_refine_':
> > : undefined reference to `pgf90_auto_alloc'
> > /opt/xt-libsci/10.2.1/pgi/snos64/lib/libsci.a(irt_lu_real_parallel.o)
> > (.text+0x1337): In function `irt_lu_real_parallel_refine_':
> > : undefined reference to `pgf90_auto_dealloc'
> > /opt/xt-libsci/10.2.1/pgi/snos64/lib/libsci.a(irt_lu_real_parallel.o)
> > (.text+0x1342): In function `irt_lu_real_parallel_refine_':
> > : undefined reference to `pgf90_auto_dealloc'
> > /opt/xt-libsci/10.2.1/pgi/snos64/lib/libsci.a(irt_lu_real_parallel.o)
> > (.text+0x134c): In function `irt_lu_real_parallel_refine_':
> > : undefined reference to `pgf90_auto_dealloc'
> > /opt/xt-libsci/10.2.1/pgi/snos64/lib/libsci.a(irt_lu_real_parallel.o)
> > (.text+0x13c0): In function `irt_lu_real_parallel_est_cond_':
> > : undefined reference to `pgf90_auto_alloc'
> > /opt/xt-libsci/10.2.1/pgi/snos64/lib/libsci.a(irt_lu_real_parallel.o)
> > (.text+0x13d9): In function `irt_lu_real_parallel_est_cond_':
> > : undefined reference to `pgf90_auto_alloc'
> > /opt/xt-libsci/10.2.1/pgi/snos64/lib/libsci.a(irt_lu_real_parallel.o)
> > (.text+0x14a1): In function `irt_lu_real_parallel_est_cond_':
> > : undefined reference to `pgf90_auto_dealloc'
> > /opt/xt-libsci/10.2.1/pgi/snos64/lib/libsci.a(irt_lu_real_parallel.o)
> > (.text+0x14ab): In function `irt_lu_real_parallel_est_cond_':
> > : undefined reference to `pgf90_auto_dealloc'
>
> > On Jul 10, 1:27 pm, Teodoro Laino <teodor... at gmail.com> wrote:
>
> > > Ciao Yudong,
>
> > > this looks like a miscompiling problem of pgi.. which version are you
> > > using?
>
> > > 6.2.5 should work.. no luck to have the 7.X working.. but I didn't
> > > check the very last versions of the 7 series..
> > > so maybe one of the very last is again fully functional (i.e. less
> > > bugged than the first 7.X versions) ..
>
> > > Teo
>
> > > On 10 Jul 2008, at 14:06, Yudong Sun wrote:
>
> > > > Hi,
>
> > > > I have compiled cp2k on Cray XT4 using pgi. The compilation has
> > > > completed. However the execution job fails with the following error:
>
> > > >   *
> > > >   *** ERROR in init_fft  ***
> > > >   *
>
> > > >   *** Unknown FFT library:
> > > > FFTW3  ***
>
> > > > My makefile is based on Linux-x86-64-pgi.popt with some modifications:
>
> > > > CC       = cc
> > > > CPP      = cpp
> > > > FC       = ftn -Mfree
> > > > LD       = ftn
> > > > AR       = ar -r
> > > > FFTW_INC = /opt/fftw/fftw/cnos/include
> > > > DFLAGS   = -D__PGI -D__FFTSG \
> > > >             -D__parallel -D__BLACS -D__SCALAPACK \
> > > >             -D__FFTW3
> > > > CPPFLAGS = -traditional -C $(DFLAGS) -P -I$(FFTW_INC)
> > > > FCFLAGS  = -fastsse -tp amd64 -I$(FFTW_INC)
> > > > LDFLAGS  = $(FCFLAGS)
> > > > LIBS     = -lacml -lsci -lfftw3
>
> > > > OBJECTS_ARCHITECTURE = machine_pgi.o
>
> > > > I have loaded fftw/3.1.1 module into my environment. Any idea about
> > > > how
> > > > to fix the problem?
>
> > > > Thanks,
>
> > > > Yudong
>
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