PM6 - MTD - Matrix diagonalization failed
Francesco
francesc... at gmail.com
Fri Dec 19 11:39:56 UTC 2008
I'm sorry, I wrongly though sending all the input could be more
"wasting time"...
Here the input
&EXT_RESTART
RESTART_FILE_NAME cp2k-1.restart
&END EXT_RESTART
&MOTION
&MD
COMVEL_TOL 1E-08
ANGVEL_ZERO T
ENSEMBLE NVT
STEPS 100000
TIMESTEP 0.5
TEMPERATURE 300.0
&THERMOSTAT
TYPE NOSE
REGION GLOBAL
&NOSE
LENGTH 4
TIMECON 10
&END NOSE
&END THERMOSTAT
&END MD
&FREE_ENERGY
METHOD METADYN
&METADYN
DO_HILLS T
LAGRANGE T
WW 0.002
TEMPERATURE 300.0
NT_HILLS 150
&METAVAR
MASS 10.0
WIDTH 0.15
LAMBDA 0.3
COLVAR 1
&END METAVAR
&METAVAR
MASS 10.0
WIDTH 0.15
LAMBDA 0.3
COLVAR 2
&END METAVAR
&PRINT
&COLVAR
FILENAME =colvar
&END COLVAR
&END PRINT
&END METADYN
&END FREE_ENERGY
&PRINT
&TRAJECTORY
&EACH
MD 20
&END EACH
&END TRAJECTORY
&VELOCITIES
&EACH
MD 20
&END EACH
&END VELOCITIES
&RESTART
&EACH
MD 200
&END EACH
&END RESTART
&END PRINT
&GEO_OPT
&END GEO_OPT
&END MOTION
&FORCE_EVAL
METHOD QS
&DFT
&POISSON
POISSON_SOLVER WAVELET
PERIODIC NONE
&END POISSON
&QS
METHOD PM6
&SE
ANALYTICAL_GRADIENTS F
STO_NG 6
&END SE
&END QS
&SCF
SCF_GUESS MOPAC
EPS_SCF 1.0E-06
&PRINT
&RESTART OFF
&END RESTART
&END PRINT
&END SCF
&END DFT
&SUBSYS
&TOPOLOGY
CENTER_COORDINATES T
&END TOPOLOGY
&CELL
ABC 26.0 26.0 26.0
PERIODIC NONE
&END CELL
&COORD
&END COORD
&VELOCITY
&END VELOCITY
&COLVAR
&DISTANCE
ATOMS 27 26
&END DISTANCE
&END COLVAR
&COLVAR
&DISTANCE
ATOMS 27 28
&END DISTANCE
&END COLVAR
&END SUBSYS
&END FORCE_EVAL
&GLOBAL
PROJECT_NAME cp2k
RUN_TYPE MD
PRINT_LEVEL LOW
&END GLOBAL
The starting geometry is below, but clearly this input takes the
geometry into the restart
C -3.904899 -0.845867 -0.830939
C -3.115406 -0.890307 0.340835
C -3.599451 -0.396334 1.574198
C -4.887541 0.183271 1.591096
C -5.680774 0.296956 0.432897
C -5.169421 -0.219199 -0.765951
N -1.846646 -1.569609 0.286082
C -0.611450 -1.029407 0.125897
N 0.335642 -1.985359 0.351002
C -0.276835 -3.263182 0.758183
C -1.773350 -2.980331 0.698344
Ru -0.339300 0.882278 -0.430166
Cl -0.282438 -0.254470 -2.628559
C 1.776854 -1.939823 0.269209
C 2.412861 -2.373622 -0.928990
C 3.820023 -2.491550 -0.925595
C 4.589296 -2.256854 0.224169
C 3.917252 -1.869031 1.397277
C 2.521229 -1.720698 1.456678
C 1.629186 -2.691156 -2.186777
C 6.096313 -2.431016 0.215235
C 1.859430 -1.404193 2.775865
C -2.777112 -0.420383 2.831776
C -7.031509 0.964005 0.485639
C -3.454780 -1.508923 -2.106033
C 1.120594 2.015943 -1.309491
C -0.116796 2.948894 -1.432620
C -1.489295 2.182081 -1.404068
C 2.290728 2.468518 -0.512745
C 3.449983 1.654335 -0.519204
C 4.609490 2.043789 0.167814
C 4.641980 3.255113 0.872610
C 3.509486 4.084132 0.872232
C 2.348172 3.700326 0.179906
Cl -0.517640 1.922871 1.679461
H 1.413717 1.582114 -2.293686
H 3.433486 0.701297 -1.068882
H 5.508413 1.395315 0.136859
H 5.543403 3.551922 1.418539
H 3.529550 5.046502 1.410689
H 1.489871 4.379851 0.167420
H -2.307121 -3.614375 -0.029110
H 0.046893 -4.066343 0.075271
H -2.273125 2.696615 -0.823622
H -1.821294 1.827685 -2.396489
H -0.080799 3.467930 -2.414564
H -0.102597 3.703587 -0.626201
H 4.325133 -2.804227 -1.857099
H 4.497666 -1.714829 2.329436
H -5.272016 0.571138 2.545068
H -5.771895 -0.146649 -1.689732
H -2.308490 -1.408118 3.020504
H -1.953357 0.319217 2.766190
H -3.405589 -0.167401 3.713717
H -7.639595 0.722379 -0.408070
H -7.597934 0.653831 1.384041
H -6.930373 2.075036 0.533473
H -4.020510 -1.114678 -2.969242
H -2.373731 -1.364006 -2.302804
H -3.653448 -2.595613 -2.061599
H 1.252096 -2.268281 3.137155
H 2.615839 -1.182339 3.556384
H 1.188145 -0.532863 2.710485
H 0.997535 -1.831859 -2.492754
H 2.305975 -2.949553 -3.015588
H 0.940929 -3.553412 -2.045529
H 6.622210 -1.481323 0.447628
H 6.421685 -3.163141 0.980358
H 6.463369 -2.784327 -0.765285
H -2.274158 -3.108035 1.673925
H 0.072158 -3.534256 1.770801
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