compile problem with mvapich
shanghui
shangh... at gmail.com
Wed Aug 27 01:45:22 UTC 2008
Hello Everyone:
I 've been trying to compile cp2k for a few days on our clusters, I have
compiled the sopt version ,and it works well . But when I began to compile
the popt version, I used the intel 10.1.015, mkl 10.0.1.014 and mpif90 in
mvapich-1.0.0 ( the CPU is Xeon E5420) , I have compiled with 'make
ARCH=Linux-x86-64-intel VERSION=popt' ,and it give me a exe---cp2k.popt. The
problem is: when I run it with :mpirun -np 2 -machinefile mech
/share/apps/cp2k_parallel H2O.inp ,it give me the error message as follows
:
"
Number of independent orbital functions: 57
Extrapolation method: initial_guess
forrtl: severe (174): SIGSEGV, segmentation fault occurred
Image PC Routine Line
Source
Stack trace terminated abnormally.
forrtl: severe (174): SIGSEGV, segmentation fault occurred
Image PC Routine Line
Source
libintlc.so.5 00002AAAAB880FDA Unknown Unknown Unknown
libintlc.so.5 00002AAAAB8801DA Unknown Unknown Unknown
libifcore.so.5 00002AAAAB14455A Unknown Unknown Unknown
libifcore.so.5 00002AAAAB0CF978 Unknown Unknown Unknown
libifcore.so.5 00002AAAAB0DA69C Unknown Unknown Unknown
libpthread.so.0 00000038DC60DE70 Unknown Unknown Unknown
libc.so.6 00000038DBE67274 Unknown Unknown Unknown
libc.so.6 00000038DBE4BF03 Unknown Unknown Unknown
libintlc.so.5 00002AAAAB880006 Unknown Unknown Unknown
libintlc.so.5 00002AAAAB8810CC Unknown Unknown Unknown
Stack trace terminated abnormally.
mpispawn.c:303 Unexpected exit status
Child exited abnormally!
Killing remote processes...forrtl: error (69): process interrupted (SIGINT)
Image PC Routine Line
Source
libpthread.so.0 0000003D1F20DD4D Unknown Unknown Unknown
cp2k_parallel 000000000170C542 Unknown Unknown Unknown
libpthread.so.0 0000003D1F2062F7 Unknown Unknown Unknown
libc.so.6 0000003D1EACE85D Unknown Unknown Unknown
DONE
"
I have used this mkl'lib and mvapich-1.0.0 to compiled siesta_parallel ,and
it works well. I do not know why they can not work for cp2k_popt.
and this is my popt arch file:
"CC = cc
CPP = cpp
FC = mpif90 -FR
LD = mpif90
AR = ar -r
DFLAGS = -D__INTEL -D__FFTSG -D__parallel -D__BLACS -D__SCALAPACK
-D__FFTW3 -D__LIBINT
CPPFLAGS = -traditional -C $(DFLAGS) -P
FCFLAGS = $(DFLAGS) -O1
LDFLAGS = $(FCFLAGS)
-L/opt/intel/mkl/10.0.1.014/lib/em64t-L/opt/intel/fce/10.1.015/lib \
-L/usr/mpi/intel/mvapich-1.0.0/lib/
LIBS = /opt/intel/mkl/10.0.1.014/lib/em64t/libmkl_scalapack_lp64.a \
/opt/intel/mkl/10.0.1.014/lib/em64t/libmkl_blacs_lp64.a \
/opt/intel/mkl/10.0.1.014/lib/em64t/libmkl_lapack.a \
/opt/intel/mkl/10.0.1.014/lib/em64t/libmkl_em64t.a \
/opt/intel/fce/10.1.015/lib/libguide.a -lpthread -lsvml \
/usr/local/lib/libfftw3.a \
/home/shanghui/cp2k/libint_tools/libint_cpp_wrapper.o\
/home/shanghui/libint-1.1.2/lib/libderiv.a \
/home/shanghui/libint-1.1.2/lib/libint.a \
-lstdc++
OBJECTS_ARCHITECTURE = machine_intel.o
"
Can you give me some suggestions? Thank you so much.
shanghui
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