MM_KIND/QM_KIND atom type
Luca
bellu... at unisi.it
Fri Sep 21 15:20:32 UTC 2007
I don't understand...for atom_type I mean AMBER(FF)_atom_type
For example. My PSF file:
1 O1 1 IXA O OS -0.121300 16.0000 0
2 O1 1 IXA N NB -0.400600 14.0100 0
..............
9 W1 2 TIP3 OH2 OW -0.834000 16.0000 0
10 W1 2 TIP3 H1 HW 0.417000 1.0080 0
11 W1 2 TIP3 H2 HW 0.417000 1.0080 0
For MM water I should write:
MM_KIND OW
RADIUS.....
END
MM_KIND HW
.....
END
QM_KIND OS
MM_INDEX 1
END
etc.....
On 21 Set, 16:57, Teodoro Laino <teodor... at gmail.com> wrote:
> The rule is that in cp2k we loose any information about atom_name..
> we only work with the atom_type.
> This is valid then for MM_KIND, QM_KIND and KIND in subsys.
>
> Teo
>
> On 21 Sep 2007, at 16:30, Luca Bellucci wrote:
>
>
>
> > Hi all,
> > when I use PSF and PDB file for connectivity and coordinates I can
> > use atom_type or atom_name for define MM_KIND and QM_KIND.
> > The same thing happens in section SUBSYS with KIND key.
> > Is there a rule?
> > Thanks
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